Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06435

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06430 and SGL_RS06435 are separated by 57 nucleotidesSGL_RS06435 and SGL_RS06440 are separated by 89 nucleotides SGL_RS06430: SGL_RS06430 - glycosyltransferase family 2 protein, at 975,779 to 976,648 _RS06430 SGL_RS06435: SGL_RS06435 - cobalt-precorrin-5B (C(1))-methyltransferase CbiD, at 976,706 to 977,842 _RS06435 SGL_RS06440: SGL_RS06440 - NAD-dependent epimerase/dehydratase family protein, at 977,932 to 978,867 _RS06440 Position (kb) 976 977 978Strain fitness (log2 ratio) -3 -2 -1 0 1at 975.840 kb on + strandat 975.982 kb on + strand, within SGL_RS06430at 976.009 kb on + strand, within SGL_RS06430at 976.400 kb on + strand, within SGL_RS06430at 976.801 kb on + strandat 977.838 kb on - strandat 977.878 kb on + strandat 978.146 kb on + strand, within SGL_RS06440at 978.180 kb on + strand, within SGL_RS06440at 978.320 kb on + strand, within SGL_RS06440at 978.389 kb on - strand, within SGL_RS06440at 978.586 kb on + strand, within SGL_RS06440at 978.586 kb on + strand, within SGL_RS06440at 978.594 kb on - strand, within SGL_RS06440at 978.599 kb on - strand, within SGL_RS06440

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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975,840 + -3.7
975,982 + SGL_RS06430 0.23 -1.4
976,009 + SGL_RS06430 0.26 -2.3
976,400 + SGL_RS06430 0.71 -2.6
976,801 + -2.3
977,838 - -1.0
977,878 + -0.2
978,146 + SGL_RS06440 0.23 -1.1
978,180 + SGL_RS06440 0.26 -0.6
978,320 + SGL_RS06440 0.41 -0.5
978,389 - SGL_RS06440 0.49 -1.1
978,586 + SGL_RS06440 0.70 -0.0
978,586 + SGL_RS06440 0.70 +0.1
978,594 - SGL_RS06440 0.71 -1.6
978,599 - SGL_RS06440 0.71 -1.4

Or see this region's nucleotide sequence