Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS05030 and SGL_RS05035 are separated by 271 nucleotides SGL_RS05035 and SGL_RS05040 are separated by 179 nucleotides SGL_RS05040 and SGL_RS05050 are separated by 218 nucleotides
SGL_RS05030: SGL_RS05030 - dienelactone hydrolase family protein, at 678,283 to 679,023
_RS05030
SGL_RS05035: SGL_RS05035 - hypothetical protein, at 679,295 to 679,510
_RS05035
SGL_RS05040: SGL_RS05040 - type II toxin-antitoxin system VapC family toxin, at 679,690 to 680,178
_RS05040
SGL_RS05050: SGL_RS05050 - lipid-A-disaccharide synthase-related protein, at 680,397 to 681,572
_RS05050
Position (kb) 679
680 Strain fitness (log2 ratio) -1
0
1 at 678.540 kb on - strand, within SGL_RS05030 at 678.612 kb on - strand, within SGL_RS05030 at 678.680 kb on - strand, within SGL_RS05030 at 678.696 kb on - strand, within SGL_RS05030 at 678.768 kb on + strand, within SGL_RS05030 at 678.793 kb on - strand, within SGL_RS05030 at 678.793 kb on - strand, within SGL_RS05030 at 678.953 kb on + strand at 678.961 kb on - strand at 679.027 kb on - strand at 679.191 kb on + strand at 679.328 kb on + strand, within SGL_RS05035 at 679.573 kb on + strand at 679.647 kb on - strand at 679.807 kb on - strand, within SGL_RS05040 at 679.866 kb on + strand, within SGL_RS05040 at 679.874 kb on - strand, within SGL_RS05040 at 680.107 kb on + strand, within SGL_RS05040 at 680.130 kb on - strand at 680.358 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 678,540 - SGL_RS05030 0.35 +0.4 678,612 - SGL_RS05030 0.44 +0.1 678,680 - SGL_RS05030 0.54 -0.0 678,696 - SGL_RS05030 0.56 -0.2 678,768 + SGL_RS05030 0.65 +0.4 678,793 - SGL_RS05030 0.69 +0.3 678,793 - SGL_RS05030 0.69 +0.1 678,953 + +0.6 678,961 - -0.4 679,027 - -0.1 679,191 + -0.1 679,328 + SGL_RS05035 0.15 -1.0 679,573 + +0.1 679,647 - +0.2 679,807 - SGL_RS05040 0.24 +0.2 679,866 + SGL_RS05040 0.36 -0.2 679,874 - SGL_RS05040 0.38 -0.1 680,107 + SGL_RS05040 0.85 -0.5 680,130 - +0.1 680,358 + +0.0
Or see this region's nucleotide sequence