Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS04315 and SGL_RS04320 are separated by 22 nucleotides SGL_RS04320 and SGL_RS04325 are separated by 288 nucleotides SGL_RS04325 and SGL_RS04330 are separated by 139 nucleotides
SGL_RS04315: SGL_RS04315 - ABC transporter ATP-binding protein, at 523,016 to 523,798
_RS04315
SGL_RS04320: SGL_RS04320 - hypothetical protein, at 523,821 to 524,093
_RS04320
SGL_RS04325: SGL_RS04325 - CHAT domain-containing protein, at 524,382 to 529,595
_RS04325
SGL_RS04330: SGL_RS04330 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 529,735 to 530,688
_RS04330
Position (kb) 524
525
526
527
528
529
530 Strain fitness (log2 ratio) -2
-1
0
1 at 523.397 kb on - strand, within SGL_RS04315 at 523.579 kb on + strand, within SGL_RS04315 at 523.615 kb on + strand, within SGL_RS04315 at 523.723 kb on + strand at 523.723 kb on + strand at 523.731 kb on - strand at 523.757 kb on + strand at 523.762 kb on + strand at 523.783 kb on - strand at 523.918 kb on - strand, within SGL_RS04320 at 523.941 kb on + strand, within SGL_RS04320 at 524.022 kb on + strand, within SGL_RS04320 at 524.317 kb on - strand at 524.459 kb on - strand at 524.480 kb on + strand at 524.599 kb on - strand at 524.715 kb on - strand at 524.850 kb on + strand at 524.937 kb on + strand, within SGL_RS04325 at 525.197 kb on - strand, within SGL_RS04325 at 525.200 kb on + strand, within SGL_RS04325 at 525.213 kb on - strand, within SGL_RS04325 at 525.215 kb on - strand, within SGL_RS04325 at 525.279 kb on - strand, within SGL_RS04325 at 525.425 kb on + strand, within SGL_RS04325 at 525.571 kb on - strand, within SGL_RS04325 at 525.571 kb on - strand, within SGL_RS04325 at 525.571 kb on - strand, within SGL_RS04325 at 525.683 kb on - strand, within SGL_RS04325 at 525.741 kb on - strand, within SGL_RS04325 at 525.767 kb on - strand, within SGL_RS04325 at 525.949 kb on - strand, within SGL_RS04325 at 525.949 kb on - strand, within SGL_RS04325 at 526.138 kb on - strand, within SGL_RS04325 at 526.177 kb on - strand, within SGL_RS04325 at 526.303 kb on + strand, within SGL_RS04325 at 526.511 kb on - strand, within SGL_RS04325 at 526.560 kb on - strand, within SGL_RS04325 at 526.584 kb on - strand, within SGL_RS04325 at 526.589 kb on - strand, within SGL_RS04325 at 526.672 kb on - strand, within SGL_RS04325 at 526.979 kb on - strand, within SGL_RS04325 at 526.987 kb on + strand, within SGL_RS04325 at 527.010 kb on + strand, within SGL_RS04325 at 527.073 kb on + strand, within SGL_RS04325 at 527.081 kb on + strand, within SGL_RS04325 at 527.218 kb on + strand, within SGL_RS04325 at 527.324 kb on + strand, within SGL_RS04325 at 527.584 kb on + strand, within SGL_RS04325 at 528.059 kb on - strand, within SGL_RS04325 at 528.375 kb on + strand, within SGL_RS04325 at 528.394 kb on - strand, within SGL_RS04325 at 528.622 kb on + strand, within SGL_RS04325 at 528.632 kb on - strand, within SGL_RS04325 at 528.829 kb on + strand, within SGL_RS04325 at 528.923 kb on + strand, within SGL_RS04325 at 529.067 kb on - strand, within SGL_RS04325 at 529.072 kb on - strand, within SGL_RS04325 at 529.194 kb on + strand at 529.263 kb on + strand at 529.340 kb on + strand at 529.391 kb on + strand at 529.397 kb on + strand at 529.399 kb on - strand at 529.400 kb on - strand at 529.405 kb on - strand at 529.406 kb on - strand at 529.423 kb on - strand at 529.425 kb on + strand at 529.428 kb on - strand at 529.438 kb on - strand at 529.521 kb on - strand at 529.567 kb on + strand at 529.575 kb on + strand at 529.581 kb on - strand at 529.583 kb on - strand at 529.761 kb on + strand at 530.141 kb on - strand, within SGL_RS04330 at 530.518 kb on - strand, within SGL_RS04330
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 523,397 - SGL_RS04315 0.49 -0.3 523,579 + SGL_RS04315 0.72 -0.4 523,615 + SGL_RS04315 0.77 +0.1 523,723 + -0.5 523,723 + +0.0 523,731 - -0.9 523,757 + +0.2 523,762 + -0.0 523,783 - -0.3 523,918 - SGL_RS04320 0.36 +0.2 523,941 + SGL_RS04320 0.44 -0.1 524,022 + SGL_RS04320 0.74 -0.2 524,317 - -0.5 524,459 - +0.3 524,480 + +0.1 524,599 - +0.1 524,715 - +0.3 524,850 + +0.0 524,937 + SGL_RS04325 0.11 -0.2 525,197 - SGL_RS04325 0.16 +0.0 525,200 + SGL_RS04325 0.16 +0.1 525,213 - SGL_RS04325 0.16 +0.3 525,215 - SGL_RS04325 0.16 +0.3 525,279 - SGL_RS04325 0.17 +0.1 525,425 + SGL_RS04325 0.20 -0.1 525,571 - SGL_RS04325 0.23 +0.5 525,571 - SGL_RS04325 0.23 -0.3 525,571 - SGL_RS04325 0.23 +0.0 525,683 - SGL_RS04325 0.25 +0.4 525,741 - SGL_RS04325 0.26 +0.4 525,767 - SGL_RS04325 0.27 +0.1 525,949 - SGL_RS04325 0.30 +0.2 525,949 - SGL_RS04325 0.30 -0.2 526,138 - SGL_RS04325 0.34 +0.2 526,177 - SGL_RS04325 0.34 +0.0 526,303 + SGL_RS04325 0.37 -0.2 526,511 - SGL_RS04325 0.41 +0.3 526,560 - SGL_RS04325 0.42 +0.4 526,584 - SGL_RS04325 0.42 -0.1 526,589 - SGL_RS04325 0.42 -0.1 526,672 - SGL_RS04325 0.44 -0.2 526,979 - SGL_RS04325 0.50 +0.2 526,987 + SGL_RS04325 0.50 +0.1 527,010 + SGL_RS04325 0.50 +0.4 527,073 + SGL_RS04325 0.52 +0.2 527,081 + SGL_RS04325 0.52 -0.1 527,218 + SGL_RS04325 0.54 -0.5 527,324 + SGL_RS04325 0.56 +0.1 527,584 + SGL_RS04325 0.61 -0.1 528,059 - SGL_RS04325 0.71 +0.0 528,375 + SGL_RS04325 0.77 +0.6 528,394 - SGL_RS04325 0.77 +1.1 528,622 + SGL_RS04325 0.81 +0.1 528,632 - SGL_RS04325 0.82 +0.4 528,829 + SGL_RS04325 0.85 +0.4 528,923 + SGL_RS04325 0.87 +0.6 529,067 - SGL_RS04325 0.90 +0.1 529,072 - SGL_RS04325 0.90 +1.0 529,194 + +0.1 529,263 + -0.1 529,340 + -0.4 529,391 + +0.2 529,397 + -0.1 529,399 - +0.1 529,400 - +0.1 529,405 - -0.1 529,406 - +0.2 529,423 - -0.4 529,425 + -0.1 529,428 - +0.3 529,438 - +0.4 529,521 - -0.1 529,567 + +0.4 529,575 + -0.6 529,581 - -0.2 529,583 - -0.2 529,761 + -1.6 530,141 - SGL_RS04330 0.43 -2.3 530,518 - SGL_RS04330 0.82 +0.3
Or see this region's nucleotide sequence