Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS04190 and SGL_RS04195 are separated by 344 nucleotides SGL_RS04195 and SGL_RS04200 are separated by 195 nucleotides SGL_RS04200 and SGL_RS04205 are separated by 46 nucleotides
SGL_RS04190: SGL_RS04190 - AMP-binding protein, at 487,467 to 489,377
_RS04190
SGL_RS04195: SGL_RS04195 - response regulator, at 489,722 to 490,888
_RS04195
SGL_RS04200: SGL_RS04200 - response regulator, at 491,084 to 491,449
_RS04200
SGL_RS04205: SGL_RS04205 - chemotaxis protein CheW, at 491,496 to 492,059
_RS04205
Position (kb) 489
490
491 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 488.774 kb on + strand, within SGL_RS04190 at 488.787 kb on - strand, within SGL_RS04190 at 488.787 kb on - strand, within SGL_RS04190 at 488.888 kb on - strand, within SGL_RS04190 at 488.951 kb on - strand, within SGL_RS04190 at 488.951 kb on - strand, within SGL_RS04190 at 489.001 kb on - strand, within SGL_RS04190 at 489.142 kb on + strand, within SGL_RS04190 at 489.461 kb on + strand at 489.548 kb on + strand at 489.584 kb on - strand at 489.637 kb on - strand at 489.701 kb on - strand at 489.701 kb on - strand at 489.756 kb on + strand at 489.817 kb on - strand at 489.899 kb on + strand, within SGL_RS04195 at 489.902 kb on + strand, within SGL_RS04195 at 489.927 kb on + strand, within SGL_RS04195 at 490.068 kb on - strand, within SGL_RS04195 at 490.087 kb on - strand, within SGL_RS04195 at 490.219 kb on + strand, within SGL_RS04195 at 490.227 kb on + strand, within SGL_RS04195 at 490.237 kb on + strand, within SGL_RS04195 at 490.336 kb on - strand, within SGL_RS04195 at 490.409 kb on - strand, within SGL_RS04195 at 490.413 kb on + strand, within SGL_RS04195 at 490.439 kb on - strand, within SGL_RS04195 at 490.516 kb on + strand, within SGL_RS04195 at 490.628 kb on + strand, within SGL_RS04195 at 490.659 kb on + strand, within SGL_RS04195 at 491.130 kb on - strand, within SGL_RS04200 at 491.222 kb on + strand, within SGL_RS04200 at 491.574 kb on + strand, within SGL_RS04205 at 491.686 kb on + strand, within SGL_RS04205 at 491.712 kb on + strand, within SGL_RS04205 at 491.712 kb on + strand, within SGL_RS04205 at 491.736 kb on - strand, within SGL_RS04205
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 488,774 + SGL_RS04190 0.68 -0.3 488,787 - SGL_RS04190 0.69 -0.6 488,787 - SGL_RS04190 0.69 -0.6 488,888 - SGL_RS04190 0.74 -0.3 488,951 - SGL_RS04190 0.78 -0.3 488,951 - SGL_RS04190 0.78 +0.4 489,001 - SGL_RS04190 0.80 -0.8 489,142 + SGL_RS04190 0.88 -0.3 489,461 + -0.5 489,548 + +0.1 489,584 - +0.1 489,637 - +0.1 489,701 - -1.4 489,701 - -0.7 489,756 + -1.3 489,817 - -1.5 489,899 + SGL_RS04195 0.15 -2.0 489,902 + SGL_RS04195 0.15 -2.2 489,927 + SGL_RS04195 0.18 -0.8 490,068 - SGL_RS04195 0.30 -0.7 490,087 - SGL_RS04195 0.31 -0.4 490,219 + SGL_RS04195 0.43 -0.8 490,227 + SGL_RS04195 0.43 -1.3 490,237 + SGL_RS04195 0.44 -1.2 490,336 - SGL_RS04195 0.53 -1.0 490,409 - SGL_RS04195 0.59 -1.0 490,413 + SGL_RS04195 0.59 -0.7 490,439 - SGL_RS04195 0.61 -1.5 490,516 + SGL_RS04195 0.68 -1.4 490,628 + SGL_RS04195 0.78 -1.8 490,659 + SGL_RS04195 0.80 -0.9 491,130 - SGL_RS04200 0.13 -3.6 491,222 + SGL_RS04200 0.38 -4.0 491,574 + SGL_RS04205 0.14 +0.8 491,686 + SGL_RS04205 0.34 +0.6 491,712 + SGL_RS04205 0.38 +0.6 491,712 + SGL_RS04205 0.38 +0.8 491,736 - SGL_RS04205 0.43 +0.2
Or see this region's nucleotide sequence