Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS04185

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS04180 and SGL_RS04185 overlap by 4 nucleotidesSGL_RS04185 and SGL_RS04190 are separated by 113 nucleotides SGL_RS04180: SGL_RS04180 - hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolyzing), at 484,799 to 486,247 _RS04180 SGL_RS04185: SGL_RS04185 - TIGR00303 family protein, at 486,244 to 487,353 _RS04185 SGL_RS04190: SGL_RS04190 - AMP-binding protein, at 487,467 to 489,377 _RS04190 Position (kb) 486 487 488Strain fitness (log2 ratio) -2 -1 0 1at 486.003 kb on + strand, within SGL_RS04180at 486.174 kb on + strandat 486.384 kb on - strand, within SGL_RS04185at 486.396 kb on - strand, within SGL_RS04185at 486.560 kb on - strand, within SGL_RS04185at 487.039 kb on + strand, within SGL_RS04185at 487.642 kb on + strandat 487.642 kb on + strandat 487.648 kb on - strandat 487.650 kb on - strandat 487.650 kb on - strandat 487.650 kb on - strandat 487.946 kb on + strand, within SGL_RS04190at 487.953 kb on + strand, within SGL_RS04190at 487.961 kb on - strand, within SGL_RS04190at 488.015 kb on + strand, within SGL_RS04190at 488.023 kb on - strand, within SGL_RS04190at 488.132 kb on - strand, within SGL_RS04190at 488.138 kb on - strand, within SGL_RS04190at 488.249 kb on + strand, within SGL_RS04190

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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486,003 + SGL_RS04180 0.83 -2.3
486,174 + -2.3
486,384 - SGL_RS04185 0.13 -1.8
486,396 - SGL_RS04185 0.14 -1.0
486,560 - SGL_RS04185 0.28 -1.0
487,039 + SGL_RS04185 0.72 -1.0
487,642 + -0.1
487,642 + -0.5
487,648 - -0.3
487,650 - -0.1
487,650 - -0.6
487,650 - -0.8
487,946 + SGL_RS04190 0.25 +0.4
487,953 + SGL_RS04190 0.25 -0.1
487,961 - SGL_RS04190 0.26 +0.8
488,015 + SGL_RS04190 0.29 -0.5
488,023 - SGL_RS04190 0.29 -0.5
488,132 - SGL_RS04190 0.35 -0.9
488,138 - SGL_RS04190 0.35 +0.8
488,249 + SGL_RS04190 0.41 +0.0

Or see this region's nucleotide sequence