Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS04180

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS04175 and SGL_RS04180 are separated by 234 nucleotidesSGL_RS04180 and SGL_RS04185 overlap by 4 nucleotides SGL_RS04175: SGL_RS04175 - PQQ-dependent sugar dehydrogenase, at 483,326 to 484,564 _RS04175 SGL_RS04180: SGL_RS04180 - hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolyzing), at 484,799 to 486,247 _RS04180 SGL_RS04185: SGL_RS04185 - TIGR00303 family protein, at 486,244 to 487,353 _RS04185 Position (kb) 484 485 486 487Strain fitness (log2 ratio) -2 -1 0 1at 483.943 kb on + strand, within SGL_RS04175at 483.967 kb on - strand, within SGL_RS04175at 484.114 kb on - strand, within SGL_RS04175at 484.134 kb on + strand, within SGL_RS04175at 484.134 kb on + strand, within SGL_RS04175at 484.154 kb on - strand, within SGL_RS04175at 484.262 kb on + strand, within SGL_RS04175at 484.272 kb on + strand, within SGL_RS04175at 484.340 kb on + strand, within SGL_RS04175at 484.478 kb on - strandat 484.833 kb on - strandat 484.848 kb on - strandat 484.853 kb on - strandat 484.855 kb on - strandat 486.003 kb on + strand, within SGL_RS04180at 486.174 kb on + strandat 486.384 kb on - strand, within SGL_RS04185at 486.396 kb on - strand, within SGL_RS04185at 486.560 kb on - strand, within SGL_RS04185at 487.039 kb on + strand, within SGL_RS04185

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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483,943 + SGL_RS04175 0.50 +0.1
483,967 - SGL_RS04175 0.52 -0.4
484,114 - SGL_RS04175 0.64 -0.2
484,134 + SGL_RS04175 0.65 -0.1
484,134 + SGL_RS04175 0.65 -0.4
484,154 - SGL_RS04175 0.67 +0.6
484,262 + SGL_RS04175 0.76 -0.4
484,272 + SGL_RS04175 0.76 -0.2
484,340 + SGL_RS04175 0.82 -0.5
484,478 - -0.3
484,833 - +0.5
484,848 - +0.1
484,853 - -0.0
484,855 - -0.9
486,003 + SGL_RS04180 0.83 -2.3
486,174 + -2.3
486,384 - SGL_RS04185 0.13 -1.8
486,396 - SGL_RS04185 0.14 -1.0
486,560 - SGL_RS04185 0.28 -1.0
487,039 + SGL_RS04185 0.72 -1.0

Or see this region's nucleotide sequence