Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02585 and SGL_RS02590 are separated by 23 nucleotides SGL_RS02590 and SGL_RS02595 are separated by 11 nucleotides SGL_RS02595 and SGL_RS02600 are separated by 132 nucleotides SGL_RS02600 and SGL_RS02605 are separated by 89 nucleotides SGL_RS02605 and SGL_RS02610 are separated by 36 nucleotides
SGL_RS02585: SGL_RS02585 - LptA/OstA family protein, at 154,143 to 154,679
_RS02585
SGL_RS02590: SGL_RS02590 - LPS export ABC transporter ATP-binding protein, at 154,703 to 155,461
_RS02590
SGL_RS02595: SGL_RS02595 - precorrin-6A reductase, at 155,473 to 156,258
_RS02595
SGL_RS02600: SGL_RS02600 - photosystem I reaction center subunit PsaK, at 156,391 to 156,651
_RS02600
SGL_RS02605: SGL_RS02605 - hypothetical protein, at 156,741 to 157,013
_RS02605
SGL_RS02610: SGL_RS02610 - NAD(P)H-quinone oxidoreductase subunit N, at 157,050 to 158,615
_RS02610
Position (kb) 155
156
157 Strain fitness (log2 ratio) -2
-1
0
1 at 154.587 kb on - strand, within SGL_RS02585 at 154.592 kb on + strand, within SGL_RS02585 at 154.600 kb on - strand, within SGL_RS02585 at 154.609 kb on + strand, within SGL_RS02585 at 154.617 kb on - strand, within SGL_RS02585 at 155.915 kb on + strand, within SGL_RS02595 at 155.975 kb on + strand, within SGL_RS02595 at 156.001 kb on - strand, within SGL_RS02595 at 156.307 kb on - strand at 156.474 kb on - strand, within SGL_RS02600 at 156.574 kb on + strand, within SGL_RS02600 at 156.582 kb on - strand, within SGL_RS02600 at 156.682 kb on - strand at 156.834 kb on + strand, within SGL_RS02605 at 157.053 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 154,587 - SGL_RS02585 0.83 -1.1 154,592 + SGL_RS02585 0.84 +0.1 154,600 - SGL_RS02585 0.85 -1.7 154,609 + SGL_RS02585 0.87 +0.1 154,617 - SGL_RS02585 0.88 -0.2 155,915 + SGL_RS02595 0.56 -1.5 155,975 + SGL_RS02595 0.64 -1.5 156,001 - SGL_RS02595 0.67 -1.9 156,307 - +0.4 156,474 - SGL_RS02600 0.32 +0.2 156,574 + SGL_RS02600 0.70 -0.2 156,582 - SGL_RS02600 0.73 -0.2 156,682 - +0.1 156,834 + SGL_RS02605 0.34 -0.2 157,053 + -0.2
Or see this region's nucleotide sequence