Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02495 and SGL_RS02500 are separated by 115 nucleotides SGL_RS02500 and SGL_RS02505 are separated by 219 nucleotides SGL_RS02505 and SGL_RS02510 are separated by 116 nucleotides SGL_RS02510 and SGL_RS02515 overlap by 1 nucleotides
SGL_RS02495: SGL_RS02495 - hypothetical protein, at 140,585 to 141,007
_RS02495
SGL_RS02500: SGL_RS02500 - transposase, at 141,123 to 141,428
_RS02500
SGL_RS02505: SGL_RS02505 - precorrin-4 C(11)-methyltransferase, at 141,648 to 142,442
_RS02505
SGL_RS02510: SGL_RS02510 - BlaI/MecI/CopY family transcriptional regulator, at 142,559 to 142,981
_RS02510
SGL_RS02515: SGL_RS02515 - M56 family metallopeptidase, at 142,981 to 143,826
_RS02515
Position (kb) 141
142
143 Strain fitness (log2 ratio) -2
-1
0
1 at 140.739 kb on - strand, within SGL_RS02495 at 141.359 kb on - strand, within SGL_RS02500 at 141.365 kb on - strand, within SGL_RS02500 at 141.377 kb on + strand, within SGL_RS02500 at 141.814 kb on - strand, within SGL_RS02505 at 142.158 kb on + strand, within SGL_RS02505 at 142.166 kb on - strand, within SGL_RS02505 at 142.251 kb on - strand, within SGL_RS02505 at 142.336 kb on + strand, within SGL_RS02505 at 142.420 kb on + strand at 142.455 kb on - strand at 142.526 kb on - strand at 142.526 kb on - strand at 142.545 kb on - strand at 142.602 kb on + strand, within SGL_RS02510 at 142.813 kb on + strand, within SGL_RS02510 at 142.894 kb on + strand, within SGL_RS02510 at 142.950 kb on + strand at 143.018 kb on + strand at 143.023 kb on + strand at 143.210 kb on + strand, within SGL_RS02515 at 143.343 kb on + strand, within SGL_RS02515 at 143.357 kb on + strand, within SGL_RS02515 at 143.419 kb on + strand, within SGL_RS02515
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 140,739 - SGL_RS02495 0.36 +0.0 141,359 - SGL_RS02500 0.77 -0.1 141,365 - SGL_RS02500 0.79 +0.0 141,377 + SGL_RS02500 0.83 +0.7 141,814 - SGL_RS02505 0.21 -2.7 142,158 + SGL_RS02505 0.64 -2.3 142,166 - SGL_RS02505 0.65 +0.1 142,251 - SGL_RS02505 0.76 -2.1 142,336 + SGL_RS02505 0.87 -2.3 142,420 + +0.3 142,455 - +0.2 142,526 - +0.8 142,526 - -0.1 142,545 - +0.9 142,602 + SGL_RS02510 0.10 -0.0 142,813 + SGL_RS02510 0.60 -0.1 142,894 + SGL_RS02510 0.79 -0.4 142,950 + -0.2 143,018 + -0.7 143,023 + -0.3 143,210 + SGL_RS02515 0.27 -0.0 143,343 + SGL_RS02515 0.43 -1.2 143,357 + SGL_RS02515 0.44 -0.6 143,419 + SGL_RS02515 0.52 -0.9
Or see this region's nucleotide sequence