Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS01820 and SGL_RS01825 are separated by 476 nucleotides SGL_RS01825 and SGL_RS01830 are separated by 140 nucleotides SGL_RS01830 and SGL_RS01835 are separated by 21 nucleotides
SGL_RS01820: SGL_RS01820 - Fic family protein, at 92,267 to 93,343
_RS01820
SGL_RS01825: SGL_RS01825 - type II toxin-antitoxin system HigB family toxin, at 93,820 to 94,140
_RS01825
SGL_RS01830: SGL_RS01830 - transcriptional regulator, at 94,281 to 94,700
_RS01830
SGL_RS01835: SGL_RS01835 - type I restriction endonuclease subunit R, at 94,722 to 97,901
_RS01835
Position (kb)
93
94
95 Strain fitness (log2 ratio)
-1
0
1 at 92.853 kb on - strand, within SGL_RS01820 at 92.860 kb on + strand, within SGL_RS01820 at 92.898 kb on - strand, within SGL_RS01820 at 92.910 kb on - strand, within SGL_RS01820 at 93.213 kb on + strand, within SGL_RS01820 at 93.221 kb on - strand, within SGL_RS01820 at 93.356 kb on + strand at 93.356 kb on + strand at 93.356 kb on + strand at 93.516 kb on - strand at 93.542 kb on + strand at 93.576 kb on - strand at 93.605 kb on + strand at 93.605 kb on + strand at 93.613 kb on - strand at 93.618 kb on - strand at 93.625 kb on - strand at 93.828 kb on - strand at 93.849 kb on - strand at 93.951 kb on - strand, within SGL_RS01825 at 94.626 kb on - strand, within SGL_RS01830 at 94.797 kb on + strand at 94.831 kb on + strand at 94.839 kb on - strand at 94.858 kb on + strand at 94.896 kb on + strand at 94.906 kb on + strand at 94.931 kb on + strand at 95.031 kb on - strand at 95.034 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 92,853 - SGL_RS01820 0.54 -0.4 92,860 + SGL_RS01820 0.55 -0.9 92,898 - SGL_RS01820 0.59 -0.6 92,910 - SGL_RS01820 0.60 +0.0 93,213 + SGL_RS01820 0.88 +0.7 93,221 - SGL_RS01820 0.89 -0.4 93,356 + -0.0 93,356 + -0.3 93,356 + +0.2 93,516 - +0.4 93,542 + -0.3 93,576 - -0.2 93,605 + +0.4 93,605 + -0.0 93,613 - -0.0 93,618 - -0.2 93,625 - -0.3 93,828 - +0.1 93,849 - +0.2 93,951 - SGL_RS01825 0.41 -0.8 94,626 - SGL_RS01830 0.82 -0.3 94,797 + +0.3 94,831 + -0.7 94,839 - -0.1 94,858 + +0.2 94,896 + -0.4 94,906 + -0.2 94,931 + +0.0 95,031 - +0.1 95,034 + +0.2
Or see this region's nucleotide sequence