Experiment: D-Sorbitol 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS18050 and SGL_RS18055 are separated by 110 nucleotides SGL_RS18055 and SGL_RS18060 are separated by 198 nucleotides SGL_RS18060 and SGL_RS18065 are separated by 237 nucleotides SGL_RS18065 and SGL_RS19145 are separated by 26 nucleotides
SGL_RS18050: SGL_RS18050 - tRNA pseudouridine(55) synthase TruB, at 3,508,111 to 3,509,001
_RS18050
SGL_RS18055: SGL_RS18055 - HAD family hydrolase, at 3,509,112 to 3,509,747
_RS18055
SGL_RS18060: SGL_RS18060 - S8 family serine peptidase, at 3,509,946 to 3,511,580
_RS18060
SGL_RS18065: SGL_RS18065 - IS701 family transposase, at 3,511,818 to 3,512,288
_RS18065
SGL_RS19145: SGL_RS19145 - IS630-like element ISTcSa family transposase, at 3,512,315 to 3,513,163
_RS19145
Position (kb)
3509
3510
3511
3512 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3508.980 kb on - strand at 3509.192 kb on - strand, within SGL_RS18055 at 3509.197 kb on + strand, within SGL_RS18055 at 3509.224 kb on - strand, within SGL_RS18055 at 3509.240 kb on + strand, within SGL_RS18055 at 3509.414 kb on + strand, within SGL_RS18055 at 3509.750 kb on - strand at 3509.927 kb on + strand at 3510.048 kb on - strand at 3510.053 kb on - strand at 3510.124 kb on + strand, within SGL_RS18060 at 3510.124 kb on + strand, within SGL_RS18060 at 3510.145 kb on + strand, within SGL_RS18060 at 3510.293 kb on + strand, within SGL_RS18060 at 3510.299 kb on + strand, within SGL_RS18060 at 3510.307 kb on - strand, within SGL_RS18060 at 3510.315 kb on + strand, within SGL_RS18060 at 3510.393 kb on + strand, within SGL_RS18060 at 3510.466 kb on + strand, within SGL_RS18060 at 3510.580 kb on + strand, within SGL_RS18060 at 3510.641 kb on + strand, within SGL_RS18060 at 3510.641 kb on + strand, within SGL_RS18060 at 3510.641 kb on + strand, within SGL_RS18060 at 3510.649 kb on - strand, within SGL_RS18060 at 3510.649 kb on - strand, within SGL_RS18060 at 3510.649 kb on - strand, within SGL_RS18060 at 3510.649 kb on - strand, within SGL_RS18060 at 3510.858 kb on - strand, within SGL_RS18060 at 3510.869 kb on + strand, within SGL_RS18060 at 3510.877 kb on + strand, within SGL_RS18060 at 3511.087 kb on + strand, within SGL_RS18060 at 3511.157 kb on + strand, within SGL_RS18060 at 3511.173 kb on - strand, within SGL_RS18060 at 3511.370 kb on + strand, within SGL_RS18060 at 3511.419 kb on - strand at 3511.554 kb on - strand at 3511.569 kb on + strand at 3511.584 kb on + strand at 3511.595 kb on + strand at 3511.603 kb on - strand at 3512.284 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM remove 3,508,980 - -1.5 3,509,192 - SGL_RS18055 0.13 -0.3 3,509,197 + SGL_RS18055 0.13 +0.4 3,509,224 - SGL_RS18055 0.18 +0.2 3,509,240 + SGL_RS18055 0.20 -0.3 3,509,414 + SGL_RS18055 0.47 -0.2 3,509,750 - +0.4 3,509,927 + +0.5 3,510,048 - -1.8 3,510,053 - -2.1 3,510,124 + SGL_RS18060 0.11 -1.5 3,510,124 + SGL_RS18060 0.11 -2.4 3,510,145 + SGL_RS18060 0.12 -1.1 3,510,293 + SGL_RS18060 0.21 -1.7 3,510,299 + SGL_RS18060 0.22 -2.1 3,510,307 - SGL_RS18060 0.22 -1.8 3,510,315 + SGL_RS18060 0.23 +0.7 3,510,393 + SGL_RS18060 0.27 -2.3 3,510,466 + SGL_RS18060 0.32 -2.1 3,510,580 + SGL_RS18060 0.39 -0.6 3,510,641 + SGL_RS18060 0.43 -0.8 3,510,641 + SGL_RS18060 0.43 -2.5 3,510,641 + SGL_RS18060 0.43 -2.2 3,510,649 - SGL_RS18060 0.43 -1.7 3,510,649 - SGL_RS18060 0.43 -1.7 3,510,649 - SGL_RS18060 0.43 -2.1 3,510,649 - SGL_RS18060 0.43 -0.6 3,510,858 - SGL_RS18060 0.56 -1.0 3,510,869 + SGL_RS18060 0.56 -0.9 3,510,877 + SGL_RS18060 0.57 -2.1 3,511,087 + SGL_RS18060 0.70 -1.6 3,511,157 + SGL_RS18060 0.74 -2.1 3,511,173 - SGL_RS18060 0.75 -2.9 3,511,370 + SGL_RS18060 0.87 -1.0 3,511,419 - -1.5 3,511,554 - -1.5 3,511,569 + +1.7 3,511,584 + -0.9 3,511,595 + -0.3 3,511,603 - -0.4 3,512,284 + +0.0
Or see this region's nucleotide sequence