Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11090

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11085 and SGL_RS20205 are separated by 275 nucleotidesSGL_RS20205 and SGL_RS11090 are separated by 240 nucleotidesSGL_RS11090 and SGL_RS11095 are separated by 52 nucleotides SGL_RS11085: SGL_RS11085 - glucosylglycerol-phosphate synthase, at 1,947,325 to 1,948,824 _RS11085 SGL_RS20205: SGL_RS20205 - glucosylglycerol biosynthesis transcriptional repressor GgpR, at 1,949,100 to 1,949,372 _RS20205 SGL_RS11090: SGL_RS11090 - glucosylglycerol hydrolase, at 1,949,613 to 1,952,270 _RS11090 SGL_RS11095: SGL_RS11095 - glycerol kinase GlpK, at 1,952,323 to 1,953,810 _RS11095 Position (kb) 1949 1950 1951 1952 1953Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1948.797 kb on + strandat 1948.805 kb on - strandat 1949.128 kb on - strand, within SGL_RS20205at 1949.536 kb on + strandat 1949.536 kb on + strandat 1949.554 kb on - strandat 1949.565 kb on - strandat 1949.838 kb on - strandat 1949.840 kb on + strandat 1949.943 kb on + strand, within SGL_RS11090at 1950.053 kb on - strand, within SGL_RS11090at 1950.087 kb on + strand, within SGL_RS11090at 1950.203 kb on + strand, within SGL_RS11090at 1950.203 kb on + strand, within SGL_RS11090at 1950.203 kb on + strand, within SGL_RS11090at 1950.203 kb on + strand, within SGL_RS11090at 1950.203 kb on + strand, within SGL_RS11090at 1950.211 kb on - strand, within SGL_RS11090at 1950.211 kb on - strand, within SGL_RS11090at 1950.211 kb on - strand, within SGL_RS11090at 1950.211 kb on - strand, within SGL_RS11090at 1950.211 kb on - strand, within SGL_RS11090at 1950.211 kb on - strand, within SGL_RS11090at 1950.225 kb on + strand, within SGL_RS11090at 1950.285 kb on + strand, within SGL_RS11090at 1950.366 kb on - strand, within SGL_RS11090at 1950.416 kb on + strand, within SGL_RS11090at 1950.422 kb on - strand, within SGL_RS11090at 1950.422 kb on - strand, within SGL_RS11090at 1950.424 kb on - strand, within SGL_RS11090at 1950.424 kb on - strand, within SGL_RS11090at 1950.608 kb on + strand, within SGL_RS11090at 1950.848 kb on + strand, within SGL_RS11090at 1950.936 kb on - strand, within SGL_RS11090at 1951.034 kb on - strand, within SGL_RS11090at 1951.120 kb on + strand, within SGL_RS11090at 1951.249 kb on - strand, within SGL_RS11090at 1951.379 kb on - strand, within SGL_RS11090at 1951.390 kb on + strand, within SGL_RS11090at 1951.456 kb on - strand, within SGL_RS11090at 1951.458 kb on + strand, within SGL_RS11090at 1951.472 kb on + strand, within SGL_RS11090at 1951.557 kb on - strand, within SGL_RS11090at 1951.569 kb on + strand, within SGL_RS11090at 1951.589 kb on - strand, within SGL_RS11090at 1951.595 kb on - strand, within SGL_RS11090at 1951.687 kb on - strand, within SGL_RS11090at 1951.749 kb on + strand, within SGL_RS11090at 1951.905 kb on + strand, within SGL_RS11090at 1951.955 kb on - strand, within SGL_RS11090at 1951.960 kb on + strand, within SGL_RS11090at 1951.986 kb on - strand, within SGL_RS11090at 1952.021 kb on + strandat 1952.041 kb on - strandat 1952.283 kb on - strandat 1952.319 kb on + strandat 1952.361 kb on - strandat 1952.437 kb on + strandat 1952.450 kb on - strandat 1952.469 kb on + strandat 1952.598 kb on + strand, within SGL_RS11095at 1952.605 kb on - strand, within SGL_RS11095at 1952.844 kb on - strand, within SGL_RS11095at 1952.861 kb on - strand, within SGL_RS11095at 1952.880 kb on - strand, within SGL_RS11095at 1952.899 kb on - strand, within SGL_RS11095at 1953.158 kb on + strand, within SGL_RS11095

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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1,948,797 + -5.1
1,948,805 - -5.0
1,949,128 - SGL_RS20205 0.10 -1.1
1,949,536 + +0.2
1,949,536 + +0.4
1,949,554 - -3.4
1,949,565 - -4.5
1,949,838 - -3.3
1,949,840 + -3.0
1,949,943 + SGL_RS11090 0.12 -2.1
1,950,053 - SGL_RS11090 0.17 -5.0
1,950,087 + SGL_RS11090 0.18 -4.5
1,950,203 + SGL_RS11090 0.22 -5.5
1,950,203 + SGL_RS11090 0.22 -3.9
1,950,203 + SGL_RS11090 0.22 -4.2
1,950,203 + SGL_RS11090 0.22 -4.1
1,950,203 + SGL_RS11090 0.22 -2.3
1,950,211 - SGL_RS11090 0.22 -3.7
1,950,211 - SGL_RS11090 0.22 -6.0
1,950,211 - SGL_RS11090 0.22 -4.8
1,950,211 - SGL_RS11090 0.22 -2.6
1,950,211 - SGL_RS11090 0.22 -5.3
1,950,211 - SGL_RS11090 0.22 -3.5
1,950,225 + SGL_RS11090 0.23 -3.8
1,950,285 + SGL_RS11090 0.25 -3.6
1,950,366 - SGL_RS11090 0.28 -3.8
1,950,416 + SGL_RS11090 0.30 -4.7
1,950,422 - SGL_RS11090 0.30 -5.4
1,950,422 - SGL_RS11090 0.30 -5.8
1,950,424 - SGL_RS11090 0.31 -1.6
1,950,424 - SGL_RS11090 0.31 -4.1
1,950,608 + SGL_RS11090 0.37 -4.2
1,950,848 + SGL_RS11090 0.46 -4.0
1,950,936 - SGL_RS11090 0.50 -6.0
1,951,034 - SGL_RS11090 0.53 -2.3
1,951,120 + SGL_RS11090 0.57 -3.4
1,951,249 - SGL_RS11090 0.62 -4.1
1,951,379 - SGL_RS11090 0.66 -3.6
1,951,390 + SGL_RS11090 0.67 -5.3
1,951,456 - SGL_RS11090 0.69 -4.8
1,951,458 + SGL_RS11090 0.69 -4.3
1,951,472 + SGL_RS11090 0.70 -2.5
1,951,557 - SGL_RS11090 0.73 -2.2
1,951,569 + SGL_RS11090 0.74 -2.9
1,951,589 - SGL_RS11090 0.74 -5.8
1,951,595 - SGL_RS11090 0.75 -3.9
1,951,687 - SGL_RS11090 0.78 -1.1
1,951,749 + SGL_RS11090 0.80 -5.8
1,951,905 + SGL_RS11090 0.86 -2.5
1,951,955 - SGL_RS11090 0.88 -1.8
1,951,960 + SGL_RS11090 0.88 -1.6
1,951,986 - SGL_RS11090 0.89 -3.8
1,952,021 + -3.4
1,952,041 - -3.1
1,952,283 - -0.1
1,952,319 + -2.9
1,952,361 - +0.0
1,952,437 + +0.7
1,952,450 - +0.2
1,952,469 + +0.5
1,952,598 + SGL_RS11095 0.18 -0.2
1,952,605 - SGL_RS11095 0.19 -1.1
1,952,844 - SGL_RS11095 0.35 +0.5
1,952,861 - SGL_RS11095 0.36 -0.4
1,952,880 - SGL_RS11095 0.37 +0.0
1,952,899 - SGL_RS11095 0.39 -0.4
1,953,158 + SGL_RS11095 0.56 +0.4

Or see this region's nucleotide sequence