Experiment: D-Sorbitol 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS10890 and SGL_RS10895 are separated by 403 nucleotides SGL_RS10895 and SGL_RS10900 are separated by 75 nucleotides SGL_RS10900 and SGL_RS10905 are separated by 134 nucleotides
SGL_RS10890: SGL_RS10890 - LD-carboxypeptidase, at 1,909,190 to 1,910,095
_RS10890
SGL_RS10895: SGL_RS10895 - pentapeptide repeat-containing protein, at 1,910,499 to 1,911,494
_RS10895
SGL_RS10900: SGL_RS10900 - hypothetical protein, at 1,911,570 to 1,911,761
_RS10900
SGL_RS10905: SGL_RS10905 - transporter substrate-binding domain-containing protein, at 1,911,896 to 1,912,714
_RS10905
Position (kb)
1910
1911
1912 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1909.574 kb on + strand, within SGL_RS10890 at 1909.593 kb on + strand, within SGL_RS10890 at 1909.593 kb on + strand, within SGL_RS10890 at 1909.601 kb on - strand, within SGL_RS10890 at 1909.601 kb on - strand, within SGL_RS10890 at 1909.605 kb on - strand, within SGL_RS10890 at 1909.615 kb on - strand, within SGL_RS10890 at 1909.711 kb on - strand, within SGL_RS10890 at 1909.892 kb on + strand, within SGL_RS10890 at 1909.901 kb on - strand, within SGL_RS10890 at 1910.008 kb on - strand at 1910.014 kb on - strand at 1910.062 kb on - strand at 1910.088 kb on - strand at 1910.497 kb on - strand at 1910.619 kb on + strand, within SGL_RS10895 at 1910.636 kb on - strand, within SGL_RS10895 at 1910.659 kb on + strand, within SGL_RS10895 at 1910.784 kb on + strand, within SGL_RS10895 at 1910.822 kb on - strand, within SGL_RS10895 at 1910.884 kb on + strand, within SGL_RS10895 at 1910.897 kb on - strand, within SGL_RS10895 at 1910.912 kb on - strand, within SGL_RS10895 at 1910.912 kb on - strand, within SGL_RS10895 at 1910.912 kb on - strand, within SGL_RS10895 at 1910.912 kb on - strand, within SGL_RS10895 at 1910.913 kb on - strand, within SGL_RS10895 at 1910.937 kb on - strand, within SGL_RS10895 at 1911.064 kb on + strand, within SGL_RS10895 at 1911.071 kb on + strand, within SGL_RS10895 at 1911.072 kb on - strand, within SGL_RS10895 at 1911.234 kb on + strand, within SGL_RS10895 at 1911.242 kb on - strand, within SGL_RS10895 at 1911.272 kb on - strand, within SGL_RS10895 at 1911.295 kb on + strand, within SGL_RS10895 at 1911.390 kb on - strand, within SGL_RS10895 at 1911.418 kb on + strand at 1911.622 kb on + strand, within SGL_RS10900 at 1911.824 kb on - strand at 1912.095 kb on + strand, within SGL_RS10905 at 1912.112 kb on + strand, within SGL_RS10905 at 1912.137 kb on - strand, within SGL_RS10905 at 1912.169 kb on + strand, within SGL_RS10905 at 1912.238 kb on + strand, within SGL_RS10905 at 1912.247 kb on - strand, within SGL_RS10905 at 1912.330 kb on - strand, within SGL_RS10905 at 1912.379 kb on - strand, within SGL_RS10905 at 1912.383 kb on + strand, within SGL_RS10905 at 1912.420 kb on + strand, within SGL_RS10905 at 1912.475 kb on - strand, within SGL_RS10905
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM remove 1,909,574 + SGL_RS10890 0.42 -0.4 1,909,593 + SGL_RS10890 0.44 -0.4 1,909,593 + SGL_RS10890 0.44 -0.8 1,909,601 - SGL_RS10890 0.45 -1.1 1,909,601 - SGL_RS10890 0.45 -0.0 1,909,605 - SGL_RS10890 0.46 -0.8 1,909,615 - SGL_RS10890 0.47 +0.2 1,909,711 - SGL_RS10890 0.58 -0.5 1,909,892 + SGL_RS10890 0.77 -0.9 1,909,901 - SGL_RS10890 0.78 -0.7 1,910,008 - -0.2 1,910,014 - -0.8 1,910,062 - -0.9 1,910,088 - -1.3 1,910,497 - -0.5 1,910,619 + SGL_RS10895 0.12 -1.4 1,910,636 - SGL_RS10895 0.14 -1.4 1,910,659 + SGL_RS10895 0.16 -2.4 1,910,784 + SGL_RS10895 0.29 -1.9 1,910,822 - SGL_RS10895 0.32 -1.9 1,910,884 + SGL_RS10895 0.39 -1.4 1,910,897 - SGL_RS10895 0.40 -0.8 1,910,912 - SGL_RS10895 0.41 -1.7 1,910,912 - SGL_RS10895 0.41 -2.1 1,910,912 - SGL_RS10895 0.41 -0.4 1,910,912 - SGL_RS10895 0.41 -2.1 1,910,913 - SGL_RS10895 0.42 -1.7 1,910,937 - SGL_RS10895 0.44 -3.4 1,911,064 + SGL_RS10895 0.57 +0.0 1,911,071 + SGL_RS10895 0.57 -0.7 1,911,072 - SGL_RS10895 0.58 -1.3 1,911,234 + SGL_RS10895 0.74 -1.3 1,911,242 - SGL_RS10895 0.75 -1.0 1,911,272 - SGL_RS10895 0.78 -1.4 1,911,295 + SGL_RS10895 0.80 -0.1 1,911,390 - SGL_RS10895 0.89 +0.7 1,911,418 + -0.1 1,911,622 + SGL_RS10900 0.27 +0.3 1,911,824 - -0.3 1,912,095 + SGL_RS10905 0.24 +0.7 1,912,112 + SGL_RS10905 0.26 -0.1 1,912,137 - SGL_RS10905 0.29 -0.6 1,912,169 + SGL_RS10905 0.33 -0.0 1,912,238 + SGL_RS10905 0.42 +0.2 1,912,247 - SGL_RS10905 0.43 +1.1 1,912,330 - SGL_RS10905 0.53 -0.3 1,912,379 - SGL_RS10905 0.59 -2.6 1,912,383 + SGL_RS10905 0.59 -0.3 1,912,420 + SGL_RS10905 0.64 -0.4 1,912,475 - SGL_RS10905 0.71 +0.2
Or see this region's nucleotide sequence