Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10895

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10890 and SGL_RS10895 are separated by 403 nucleotidesSGL_RS10895 and SGL_RS10900 are separated by 75 nucleotidesSGL_RS10900 and SGL_RS10905 are separated by 134 nucleotides SGL_RS10890: SGL_RS10890 - LD-carboxypeptidase, at 1,909,190 to 1,910,095 _RS10890 SGL_RS10895: SGL_RS10895 - pentapeptide repeat-containing protein, at 1,910,499 to 1,911,494 _RS10895 SGL_RS10900: SGL_RS10900 - hypothetical protein, at 1,911,570 to 1,911,761 _RS10900 SGL_RS10905: SGL_RS10905 - transporter substrate-binding domain-containing protein, at 1,911,896 to 1,912,714 _RS10905 Position (kb) 1910 1911 1912Strain fitness (log2 ratio) -3 -2 -1 0 1at 1909.574 kb on + strand, within SGL_RS10890at 1909.593 kb on + strand, within SGL_RS10890at 1909.593 kb on + strand, within SGL_RS10890at 1909.601 kb on - strand, within SGL_RS10890at 1909.601 kb on - strand, within SGL_RS10890at 1909.605 kb on - strand, within SGL_RS10890at 1909.615 kb on - strand, within SGL_RS10890at 1909.711 kb on - strand, within SGL_RS10890at 1909.892 kb on + strand, within SGL_RS10890at 1909.901 kb on - strand, within SGL_RS10890at 1910.008 kb on - strandat 1910.014 kb on - strandat 1910.062 kb on - strandat 1910.088 kb on - strandat 1910.497 kb on - strandat 1910.619 kb on + strand, within SGL_RS10895at 1910.636 kb on - strand, within SGL_RS10895at 1910.659 kb on + strand, within SGL_RS10895at 1910.784 kb on + strand, within SGL_RS10895at 1910.822 kb on - strand, within SGL_RS10895at 1910.884 kb on + strand, within SGL_RS10895at 1910.897 kb on - strand, within SGL_RS10895at 1910.912 kb on - strand, within SGL_RS10895at 1910.912 kb on - strand, within SGL_RS10895at 1910.912 kb on - strand, within SGL_RS10895at 1910.912 kb on - strand, within SGL_RS10895at 1910.913 kb on - strand, within SGL_RS10895at 1910.937 kb on - strand, within SGL_RS10895at 1911.064 kb on + strand, within SGL_RS10895at 1911.071 kb on + strand, within SGL_RS10895at 1911.072 kb on - strand, within SGL_RS10895at 1911.234 kb on + strand, within SGL_RS10895at 1911.242 kb on - strand, within SGL_RS10895at 1911.272 kb on - strand, within SGL_RS10895at 1911.295 kb on + strand, within SGL_RS10895at 1911.390 kb on - strand, within SGL_RS10895at 1911.418 kb on + strandat 1911.622 kb on + strand, within SGL_RS10900at 1911.824 kb on - strandat 1912.095 kb on + strand, within SGL_RS10905at 1912.112 kb on + strand, within SGL_RS10905at 1912.137 kb on - strand, within SGL_RS10905at 1912.169 kb on + strand, within SGL_RS10905at 1912.238 kb on + strand, within SGL_RS10905at 1912.247 kb on - strand, within SGL_RS10905at 1912.330 kb on - strand, within SGL_RS10905at 1912.379 kb on - strand, within SGL_RS10905at 1912.383 kb on + strand, within SGL_RS10905at 1912.420 kb on + strand, within SGL_RS10905at 1912.475 kb on - strand, within SGL_RS10905

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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1,909,574 + SGL_RS10890 0.42 -0.4
1,909,593 + SGL_RS10890 0.44 -0.4
1,909,593 + SGL_RS10890 0.44 -0.8
1,909,601 - SGL_RS10890 0.45 -1.1
1,909,601 - SGL_RS10890 0.45 -0.0
1,909,605 - SGL_RS10890 0.46 -0.8
1,909,615 - SGL_RS10890 0.47 +0.2
1,909,711 - SGL_RS10890 0.58 -0.5
1,909,892 + SGL_RS10890 0.77 -0.9
1,909,901 - SGL_RS10890 0.78 -0.7
1,910,008 - -0.2
1,910,014 - -0.8
1,910,062 - -0.9
1,910,088 - -1.3
1,910,497 - -0.5
1,910,619 + SGL_RS10895 0.12 -1.4
1,910,636 - SGL_RS10895 0.14 -1.4
1,910,659 + SGL_RS10895 0.16 -2.4
1,910,784 + SGL_RS10895 0.29 -1.9
1,910,822 - SGL_RS10895 0.32 -1.9
1,910,884 + SGL_RS10895 0.39 -1.4
1,910,897 - SGL_RS10895 0.40 -0.8
1,910,912 - SGL_RS10895 0.41 -1.7
1,910,912 - SGL_RS10895 0.41 -2.1
1,910,912 - SGL_RS10895 0.41 -0.4
1,910,912 - SGL_RS10895 0.41 -2.1
1,910,913 - SGL_RS10895 0.42 -1.7
1,910,937 - SGL_RS10895 0.44 -3.4
1,911,064 + SGL_RS10895 0.57 +0.0
1,911,071 + SGL_RS10895 0.57 -0.7
1,911,072 - SGL_RS10895 0.58 -1.3
1,911,234 + SGL_RS10895 0.74 -1.3
1,911,242 - SGL_RS10895 0.75 -1.0
1,911,272 - SGL_RS10895 0.78 -1.4
1,911,295 + SGL_RS10895 0.80 -0.1
1,911,390 - SGL_RS10895 0.89 +0.7
1,911,418 + -0.1
1,911,622 + SGL_RS10900 0.27 +0.3
1,911,824 - -0.3
1,912,095 + SGL_RS10905 0.24 +0.7
1,912,112 + SGL_RS10905 0.26 -0.1
1,912,137 - SGL_RS10905 0.29 -0.6
1,912,169 + SGL_RS10905 0.33 -0.0
1,912,238 + SGL_RS10905 0.42 +0.2
1,912,247 - SGL_RS10905 0.43 +1.1
1,912,330 - SGL_RS10905 0.53 -0.3
1,912,379 - SGL_RS10905 0.59 -2.6
1,912,383 + SGL_RS10905 0.59 -0.3
1,912,420 + SGL_RS10905 0.64 -0.4
1,912,475 - SGL_RS10905 0.71 +0.2

Or see this region's nucleotide sequence