Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09225

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09220 and SGL_RS09225 are separated by 222 nucleotidesSGL_RS09225 and SGL_RS09230 are separated by 172 nucleotides SGL_RS09220: SGL_RS09220 - ATP-binding protein, at 1,572,849 to 1,575,701 _RS09220 SGL_RS09225: SGL_RS09225 - glycerol-3-phosphate 1-O-acyltransferase PlsY, at 1,575,924 to 1,576,592 _RS09225 SGL_RS09230: SGL_RS09230 - GldG family protein, at 1,576,765 to 1,578,552 _RS09230 Position (kb) 1575 1576 1577Strain fitness (log2 ratio) -1 0 1at 1574.983 kb on + strand, within SGL_RS09220at 1575.012 kb on - strand, within SGL_RS09220at 1575.014 kb on + strand, within SGL_RS09220at 1575.061 kb on + strand, within SGL_RS09220at 1575.105 kb on - strand, within SGL_RS09220at 1575.180 kb on - strand, within SGL_RS09220at 1575.227 kb on - strand, within SGL_RS09220at 1575.594 kb on - strandat 1575.695 kb on + strandat 1575.695 kb on + strandat 1575.703 kb on - strandat 1575.783 kb on + strandat 1575.822 kb on - strandat 1575.828 kb on + strandat 1575.978 kb on - strandat 1576.714 kb on - strandat 1576.730 kb on + strandat 1577.217 kb on - strand, within SGL_RS09230at 1577.348 kb on + strand, within SGL_RS09230at 1577.427 kb on + strand, within SGL_RS09230at 1577.435 kb on - strand, within SGL_RS09230at 1577.437 kb on + strand, within SGL_RS09230at 1577.445 kb on - strand, within SGL_RS09230at 1577.588 kb on - strand, within SGL_RS09230

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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1,574,983 + SGL_RS09220 0.75 -0.1
1,575,012 - SGL_RS09220 0.76 -0.2
1,575,014 + SGL_RS09220 0.76 -0.1
1,575,061 + SGL_RS09220 0.78 -0.1
1,575,105 - SGL_RS09220 0.79 +0.2
1,575,180 - SGL_RS09220 0.82 -0.1
1,575,227 - SGL_RS09220 0.83 +0.2
1,575,594 - -0.6
1,575,695 + -0.1
1,575,695 + +0.0
1,575,703 - -0.4
1,575,783 + +0.2
1,575,822 - -0.4
1,575,828 + -0.6
1,575,978 - +0.5
1,576,714 - +0.2
1,576,730 + +0.3
1,577,217 - SGL_RS09230 0.25 +0.1
1,577,348 + SGL_RS09230 0.33 -0.2
1,577,427 + SGL_RS09230 0.37 +0.8
1,577,435 - SGL_RS09230 0.37 +0.9
1,577,437 + SGL_RS09230 0.38 +0.1
1,577,445 - SGL_RS09230 0.38 +0.2
1,577,588 - SGL_RS09230 0.46 +0.4

Or see this region's nucleotide sequence