Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS05670

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS05665 and SGL_RS05670 are separated by 197 nucleotidesSGL_RS05670 and SGL_RS05675 are separated by 209 nucleotidesSGL_RS05675 and SGL_RS05680 are separated by 36 nucleotides SGL_RS05665: SGL_RS05665 - beta-ketoacyl-ACP synthase II, at 820,102 to 821,352 _RS05665 SGL_RS05670: SGL_RS05670 - acyl carrier protein, at 821,550 to 821,783 _RS05670 SGL_RS05675: SGL_RS05675 - hypothetical protein, at 821,993 to 822,424 _RS05675 SGL_RS05680: SGL_RS05680 - DUF3148 domain-containing protein, at 822,461 to 822,706 _RS05680 Position (kb) 821 822Strain fitness (log2 ratio) -3 -2 -1 0 1at 821.393 kb on - strandat 821.934 kb on + strandat 821.938 kb on - strandat 822.082 kb on + strand, within SGL_RS05675at 822.082 kb on + strand, within SGL_RS05675at 822.092 kb on + strand, within SGL_RS05675at 822.231 kb on - strand, within SGL_RS05675at 822.365 kb on - strand, within SGL_RS05675

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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821,393 - -3.7
821,934 + +0.1
821,938 - -1.2
822,082 + SGL_RS05675 0.21 -0.1
822,082 + SGL_RS05675 0.21 +0.5
822,092 + SGL_RS05675 0.23 -0.2
822,231 - SGL_RS05675 0.55 -0.4
822,365 - SGL_RS05675 0.86 -0.3

Or see this region's nucleotide sequence