Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07935 and SGL_RS07940 are separated by 1 nucleotides SGL_RS07940 and SGL_RS07945 are separated by 98 nucleotides SGL_RS07945 and SGL_RS07950 are separated by 143 nucleotides
SGL_RS07935: SGL_RS07935 - hypothetical protein, at 1,295,568 to 1,296,380
_RS07935
SGL_RS07940: SGL_RS07940 - type II secretion system protein, at 1,296,382 to 1,296,894
_RS07940
SGL_RS07945: SGL_RS07945 - type IV pilin-like G/H family protein, at 1,296,993 to 1,297,499
_RS07945
SGL_RS07950: SGL_RS07950 - methyltransferase domain-containing protein, at 1,297,643 to 1,298,965
_RS07950
Position (kb) 1296
1297
1298 Strain fitness (log2 ratio) -1
0
1 at 1296.079 kb on - strand, within SGL_RS07935 at 1296.398 kb on - strand at 1296.474 kb on + strand, within SGL_RS07940 at 1296.773 kb on + strand, within SGL_RS07940 at 1296.773 kb on + strand, within SGL_RS07940 at 1297.108 kb on - strand, within SGL_RS07945 at 1297.163 kb on - strand, within SGL_RS07945 at 1297.366 kb on + strand, within SGL_RS07945 at 1297.562 kb on - strand at 1297.654 kb on - strand at 1297.700 kb on - strand at 1297.702 kb on + strand at 1297.732 kb on + strand at 1297.740 kb on - strand at 1297.788 kb on + strand, within SGL_RS07950 at 1297.802 kb on - strand, within SGL_RS07950 at 1297.973 kb on - strand, within SGL_RS07950 at 1298.005 kb on - strand, within SGL_RS07950 at 1298.005 kb on - strand, within SGL_RS07950 at 1298.022 kb on + strand, within SGL_RS07950 at 1298.320 kb on + strand, within SGL_RS07950 at 1298.464 kb on + strand, within SGL_RS07950
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 1,296,079 - SGL_RS07935 0.63 -1.2 1,296,398 - -0.1 1,296,474 + SGL_RS07940 0.18 -0.1 1,296,773 + SGL_RS07940 0.76 -0.7 1,296,773 + SGL_RS07940 0.76 -0.3 1,297,108 - SGL_RS07945 0.23 +0.0 1,297,163 - SGL_RS07945 0.34 -0.2 1,297,366 + SGL_RS07945 0.74 -1.6 1,297,562 - -0.7 1,297,654 - +0.1 1,297,700 - +0.3 1,297,702 + -0.5 1,297,732 + -0.1 1,297,740 - +0.1 1,297,788 + SGL_RS07950 0.11 -0.1 1,297,802 - SGL_RS07950 0.12 +0.9 1,297,973 - SGL_RS07950 0.25 +0.4 1,298,005 - SGL_RS07950 0.27 +0.2 1,298,005 - SGL_RS07950 0.27 -0.2 1,298,022 + SGL_RS07950 0.29 -0.5 1,298,320 + SGL_RS07950 0.51 -0.0 1,298,464 + SGL_RS07950 0.62 +0.0
Or see this region's nucleotide sequence