Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS05355 and SGL_RS05360 are separated by 111 nucleotides SGL_RS05360 and SGL_RS05365 are separated by 49 nucleotides SGL_RS05365 and SGL_RS05370 overlap by 4 nucleotides SGL_RS05370 and SGL_RS05375 overlap by 46 nucleotides SGL_RS05375 and SGL_RS05380 overlap by 4 nucleotides SGL_RS05380 and SGL_RS05385 overlap by 8 nucleotides
SGL_RS05355: SGL_RS05355 - cation:proton antiporter, at 747,575 to 749,038
_RS05355
SGL_RS05360: SGL_RS05360 - cation:proton antiporter subunit C, at 749,150 to 749,500
_RS05360
SGL_RS05365: SGL_RS05365 - cation:proton antiporter, at 749,550 to 751,037
_RS05365
SGL_RS05370: SGL_RS05370 - Na+/H+ antiporter subunit E, at 751,034 to 751,426
_RS05370
SGL_RS05375: SGL_RS05375 - hypothetical protein, at 751,381 to 751,674
_RS05375
SGL_RS05380: SGL_RS05380 - monovalent cation/H(+) antiporter subunit G, at 751,671 to 751,967
_RS05380
SGL_RS05385: SGL_RS05385 - DUF4040 domain-containing protein, at 751,960 to 752,535
_RS05385
Position (kb) 749
750
751
752 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 748.607 kb on + strand, within SGL_RS05355 at 748.615 kb on - strand, within SGL_RS05355 at 748.780 kb on + strand, within SGL_RS05355 at 748.793 kb on + strand, within SGL_RS05355 at 748.793 kb on + strand, within SGL_RS05355 at 748.799 kb on + strand, within SGL_RS05355 at 748.847 kb on - strand, within SGL_RS05355 at 748.889 kb on + strand, within SGL_RS05355 at 748.908 kb on + strand at 748.908 kb on + strand at 748.913 kb on + strand at 748.926 kb on - strand at 748.944 kb on + strand at 748.952 kb on - strand at 749.063 kb on + strand at 749.180 kb on + strand at 749.298 kb on + strand, within SGL_RS05360 at 749.383 kb on - strand, within SGL_RS05360 at 749.393 kb on + strand, within SGL_RS05360 at 749.468 kb on - strand at 749.612 kb on - strand at 749.629 kb on - strand at 749.673 kb on - strand at 749.673 kb on - strand at 749.696 kb on + strand at 749.723 kb on + strand, within SGL_RS05365 at 749.723 kb on + strand, within SGL_RS05365 at 749.723 kb on + strand, within SGL_RS05365 at 749.731 kb on - strand, within SGL_RS05365 at 749.829 kb on + strand, within SGL_RS05365 at 749.860 kb on - strand, within SGL_RS05365 at 750.078 kb on - strand, within SGL_RS05365 at 750.114 kb on + strand, within SGL_RS05365 at 750.126 kb on + strand, within SGL_RS05365 at 750.302 kb on - strand, within SGL_RS05365 at 750.346 kb on + strand, within SGL_RS05365 at 750.450 kb on - strand, within SGL_RS05365 at 750.590 kb on - strand, within SGL_RS05365 at 750.748 kb on + strand, within SGL_RS05365 at 750.762 kb on - strand, within SGL_RS05365 at 750.766 kb on + strand, within SGL_RS05365 at 750.831 kb on + strand, within SGL_RS05365 at 750.834 kb on - strand, within SGL_RS05365 at 750.853 kb on - strand, within SGL_RS05365 at 750.902 kb on + strand at 750.920 kb on - strand at 751.026 kb on + strand at 751.258 kb on + strand, within SGL_RS05370 at 751.467 kb on + strand, within SGL_RS05375 at 751.486 kb on - strand, within SGL_RS05375 at 751.566 kb on - strand, within SGL_RS05375 at 751.811 kb on + strand, within SGL_RS05380 at 751.818 kb on - strand, within SGL_RS05380 at 751.931 kb on - strand, within SGL_RS05380 at 751.942 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 748,607 + SGL_RS05355 0.70 +0.1 748,615 - SGL_RS05355 0.71 -0.1 748,780 + SGL_RS05355 0.82 +0.0 748,793 + SGL_RS05355 0.83 -0.2 748,793 + SGL_RS05355 0.83 -0.4 748,799 + SGL_RS05355 0.84 -1.0 748,847 - SGL_RS05355 0.87 +0.1 748,889 + SGL_RS05355 0.90 +0.5 748,908 + +0.9 748,908 + -0.2 748,913 + -0.2 748,926 - +0.0 748,944 + +0.8 748,952 - +0.1 749,063 + +0.3 749,180 + +0.6 749,298 + SGL_RS05360 0.42 -0.4 749,383 - SGL_RS05360 0.66 -1.7 749,393 + SGL_RS05360 0.69 -1.3 749,468 - -1.3 749,612 - -1.4 749,629 - -1.0 749,673 - -1.2 749,673 - -0.9 749,696 + -1.3 749,723 + SGL_RS05365 0.12 -1.5 749,723 + SGL_RS05365 0.12 -2.0 749,723 + SGL_RS05365 0.12 -1.8 749,731 - SGL_RS05365 0.12 -1.4 749,829 + SGL_RS05365 0.19 -1.7 749,860 - SGL_RS05365 0.21 -1.0 750,078 - SGL_RS05365 0.35 -3.8 750,114 + SGL_RS05365 0.38 -3.0 750,126 + SGL_RS05365 0.39 -1.4 750,302 - SGL_RS05365 0.51 -1.4 750,346 + SGL_RS05365 0.53 -2.0 750,450 - SGL_RS05365 0.60 -0.9 750,590 - SGL_RS05365 0.70 -1.8 750,748 + SGL_RS05365 0.81 -1.8 750,762 - SGL_RS05365 0.81 -1.5 750,766 + SGL_RS05365 0.82 -2.0 750,831 + SGL_RS05365 0.86 -1.8 750,834 - SGL_RS05365 0.86 -1.3 750,853 - SGL_RS05365 0.88 -1.5 750,902 + -0.6 750,920 - -1.8 751,026 + -0.1 751,258 + SGL_RS05370 0.57 -0.7 751,467 + SGL_RS05375 0.29 -1.2 751,486 - SGL_RS05375 0.36 -1.4 751,566 - SGL_RS05375 0.63 -2.0 751,811 + SGL_RS05380 0.47 +1.0 751,818 - SGL_RS05380 0.49 -0.7 751,931 - SGL_RS05380 0.88 -0.6 751,942 - -0.6
Or see this region's nucleotide sequence