Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS00495

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS00490 and SGL_RS00495 overlap by 4 nucleotidesSGL_RS00495 and SGL_RS00500 are separated by 115 nucleotidesSGL_RS00500 and SGL_RS19305 are separated by 382 nucleotides SGL_RS00490: SGL_RS00490 - ParA family protein, at 98,614 to 99,219 _RS00490 SGL_RS00495: SGL_RS00495 - hypothetical protein, at 99,216 to 99,449 _RS00495 SGL_RS00500: SGL_RS00500 - cytidine deaminase, at 99,565 to 99,981 _RS00500 SGL_RS19305: SGL_RS19305 - hypothetical protein, at 100,364 to 100,759 _RS19305 Position (kb) 99 100Strain fitness (log2 ratio) -1 0 1at 98.328 kb on + strandat 98.877 kb on - strand, within SGL_RS00490at 99.244 kb on + strand, within SGL_RS00495at 99.307 kb on - strand, within SGL_RS00495at 100.020 kb on - strandat 100.325 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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98,328 + +0.4
98,877 - SGL_RS00490 0.43 +0.2
99,244 + SGL_RS00495 0.12 -0.9
99,307 - SGL_RS00495 0.39 -0.3
100,020 - -0.0
100,325 + -0.1

Or see this region's nucleotide sequence