Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS19680

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS00255 and SGL_RS19680 are separated by 75 nucleotidesSGL_RS19680 and SGL_RS00260 are separated by 236 nucleotides SGL_RS00255: SGL_RS00255 - glycosyltransferase family 2 protein, at 54,911 to 56,281 _RS00255 SGL_RS19680: SGL_RS19680 - IS1 family transposase, at 56,357 to 56,617 _RS19680 SGL_RS00260: SGL_RS00260 - sugar transferase, at 56,854 to 57,807 _RS00260 Position (kb) 56 57Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 55.359 kb on + strand, within SGL_RS00255at 55.414 kb on + strand, within SGL_RS00255at 55.414 kb on + strand, within SGL_RS00255at 55.432 kb on - strand, within SGL_RS00255at 55.544 kb on + strand, within SGL_RS00255at 55.558 kb on + strand, within SGL_RS00255at 55.691 kb on + strand, within SGL_RS00255at 55.721 kb on + strand, within SGL_RS00255at 55.732 kb on + strand, within SGL_RS00255at 55.795 kb on + strand, within SGL_RS00255at 55.835 kb on + strand, within SGL_RS00255at 55.843 kb on - strand, within SGL_RS00255at 55.843 kb on - strand, within SGL_RS00255at 55.845 kb on + strand, within SGL_RS00255at 55.845 kb on + strand, within SGL_RS00255at 55.853 kb on - strand, within SGL_RS00255at 55.853 kb on - strand, within SGL_RS00255at 56.090 kb on - strand, within SGL_RS00255at 56.149 kb on - strandat 56.161 kb on + strandat 56.161 kb on + strandat 56.379 kb on + strandat 56.387 kb on - strand, within SGL_RS19680at 56.557 kb on + strand, within SGL_RS19680at 56.576 kb on - strand, within SGL_RS19680at 56.645 kb on + strandat 56.653 kb on - strandat 56.775 kb on + strandat 56.804 kb on - strandat 57.000 kb on - strand, within SGL_RS00260at 57.046 kb on - strand, within SGL_RS00260at 57.058 kb on + strand, within SGL_RS00260at 57.125 kb on + strand, within SGL_RS00260at 57.236 kb on + strand, within SGL_RS00260at 57.384 kb on + strand, within SGL_RS00260at 57.406 kb on + strand, within SGL_RS00260at 57.411 kb on + strand, within SGL_RS00260at 57.535 kb on - strand, within SGL_RS00260at 57.562 kb on - strand, within SGL_RS00260at 57.590 kb on - strand, within SGL_RS00260at 57.605 kb on + strand, within SGL_RS00260at 57.613 kb on - strand, within SGL_RS00260

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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55,359 + SGL_RS00255 0.33 -4.6
55,414 + SGL_RS00255 0.37 -3.4
55,414 + SGL_RS00255 0.37 -6.1
55,432 - SGL_RS00255 0.38 -5.9
55,544 + SGL_RS00255 0.46 -5.0
55,558 + SGL_RS00255 0.47 -5.7
55,691 + SGL_RS00255 0.57 -6.5
55,721 + SGL_RS00255 0.59 -5.1
55,732 + SGL_RS00255 0.60 -4.9
55,795 + SGL_RS00255 0.64 -5.3
55,835 + SGL_RS00255 0.67 -2.8
55,843 - SGL_RS00255 0.68 -5.9
55,843 - SGL_RS00255 0.68 -3.4
55,845 + SGL_RS00255 0.68 -6.2
55,845 + SGL_RS00255 0.68 -5.0
55,853 - SGL_RS00255 0.69 -5.1
55,853 - SGL_RS00255 0.69 -4.0
56,090 - SGL_RS00255 0.86 -5.3
56,149 - -5.5
56,161 + -2.2
56,161 + -2.5
56,379 + +0.4
56,387 - SGL_RS19680 0.11 +0.3
56,557 + SGL_RS19680 0.77 +0.2
56,576 - SGL_RS19680 0.84 +0.4
56,645 + +0.3
56,653 - -0.9
56,775 + -0.7
56,804 - -0.4
57,000 - SGL_RS00260 0.15 +1.6
57,046 - SGL_RS00260 0.20 +0.2
57,058 + SGL_RS00260 0.21 +0.3
57,125 + SGL_RS00260 0.28 -1.1
57,236 + SGL_RS00260 0.40 -1.0
57,384 + SGL_RS00260 0.56 +1.6
57,406 + SGL_RS00260 0.58 +0.4
57,411 + SGL_RS00260 0.58 +0.4
57,535 - SGL_RS00260 0.71 +0.5
57,562 - SGL_RS00260 0.74 +0.6
57,590 - SGL_RS00260 0.77 +0.6
57,605 + SGL_RS00260 0.79 -0.2
57,613 - SGL_RS00260 0.80 +0.9

Or see this region's nucleotide sequence