Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS14600 and SGL_RS14605 are separated by 616 nucleotides SGL_RS14605 and SGL_RS14610 overlap by 4 nucleotides
SGL_RS14600: SGL_RS14600 - DUF4912 domain-containing protein, at 2,728,812 to 2,730,071
_RS14600
SGL_RS14605: SGL_RS14605 - ergothioneine biosynthesis protein EgtC, at 2,730,688 to 2,731,563
_RS14605
SGL_RS14610: SGL_RS14610 - RNA polymerase sigma factor SigC, at 2,731,560 to 2,732,774
_RS14610
Position (kb)
2730
2731
2732 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2729.693 kb on + strand, within SGL_RS14600 at 2729.721 kb on - strand, within SGL_RS14600 at 2729.825 kb on - strand, within SGL_RS14600 at 2729.849 kb on - strand, within SGL_RS14600 at 2730.006 kb on + strand at 2730.233 kb on + strand at 2730.241 kb on - strand at 2730.241 kb on - strand at 2730.622 kb on + strand at 2730.875 kb on - strand, within SGL_RS14605 at 2730.932 kb on - strand, within SGL_RS14605 at 2730.935 kb on + strand, within SGL_RS14605 at 2731.016 kb on - strand, within SGL_RS14605 at 2731.099 kb on + strand, within SGL_RS14605 at 2731.107 kb on - strand, within SGL_RS14605 at 2731.348 kb on + strand, within SGL_RS14605 at 2731.357 kb on + strand, within SGL_RS14605 at 2731.435 kb on + strand, within SGL_RS14605 at 2731.456 kb on + strand, within SGL_RS14605 at 2731.643 kb on + strand at 2731.643 kb on + strand at 2731.651 kb on - strand at 2731.651 kb on - strand at 2731.705 kb on - strand, within SGL_RS14610 at 2731.888 kb on - strand, within SGL_RS14610 at 2731.916 kb on - strand, within SGL_RS14610 at 2732.028 kb on + strand, within SGL_RS14610 at 2732.036 kb on - strand, within SGL_RS14610 at 2732.072 kb on - strand, within SGL_RS14610 at 2732.134 kb on + strand, within SGL_RS14610 at 2732.142 kb on - strand, within SGL_RS14610 at 2732.161 kb on + strand, within SGL_RS14610 at 2732.219 kb on - strand, within SGL_RS14610 at 2732.478 kb on + strand, within SGL_RS14610
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,729,693 + SGL_RS14600 0.70 -3.3 2,729,721 - SGL_RS14600 0.72 -2.8 2,729,825 - SGL_RS14600 0.80 -0.9 2,729,849 - SGL_RS14600 0.82 +0.9 2,730,006 + -0.3 2,730,233 + -1.7 2,730,241 - -0.9 2,730,241 - -1.1 2,730,622 + +0.5 2,730,875 - SGL_RS14605 0.21 +0.8 2,730,932 - SGL_RS14605 0.28 +2.2 2,730,935 + SGL_RS14605 0.28 +0.5 2,731,016 - SGL_RS14605 0.37 +2.0 2,731,099 + SGL_RS14605 0.47 +1.7 2,731,107 - SGL_RS14605 0.48 +0.5 2,731,348 + SGL_RS14605 0.75 +1.1 2,731,357 + SGL_RS14605 0.76 +0.8 2,731,435 + SGL_RS14605 0.85 +1.8 2,731,456 + SGL_RS14605 0.88 +1.4 2,731,643 + -1.5 2,731,643 + -1.9 2,731,651 - -3.0 2,731,651 - -0.9 2,731,705 - SGL_RS14610 0.12 -1.1 2,731,888 - SGL_RS14610 0.27 -1.4 2,731,916 - SGL_RS14610 0.29 -3.4 2,732,028 + SGL_RS14610 0.39 -2.5 2,732,036 - SGL_RS14610 0.39 -1.0 2,732,072 - SGL_RS14610 0.42 -1.9 2,732,134 + SGL_RS14610 0.47 -0.9 2,732,142 - SGL_RS14610 0.48 -0.6 2,732,161 + SGL_RS14610 0.49 -0.7 2,732,219 - SGL_RS14610 0.54 -1.7 2,732,478 + SGL_RS14610 0.76 -1.8
Or see this region's nucleotide sequence