Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14605

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14600 and SGL_RS14605 are separated by 616 nucleotidesSGL_RS14605 and SGL_RS14610 overlap by 4 nucleotides SGL_RS14600: SGL_RS14600 - DUF4912 domain-containing protein, at 2,728,812 to 2,730,071 _RS14600 SGL_RS14605: SGL_RS14605 - ergothioneine biosynthesis protein EgtC, at 2,730,688 to 2,731,563 _RS14605 SGL_RS14610: SGL_RS14610 - RNA polymerase sigma factor SigC, at 2,731,560 to 2,732,774 _RS14610 Position (kb) 2730 2731 2732Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2729.693 kb on + strand, within SGL_RS14600at 2729.721 kb on - strand, within SGL_RS14600at 2729.825 kb on - strand, within SGL_RS14600at 2729.849 kb on - strand, within SGL_RS14600at 2730.006 kb on + strandat 2730.233 kb on + strandat 2730.241 kb on - strandat 2730.241 kb on - strandat 2730.622 kb on + strandat 2730.875 kb on - strand, within SGL_RS14605at 2730.932 kb on - strand, within SGL_RS14605at 2730.935 kb on + strand, within SGL_RS14605at 2731.016 kb on - strand, within SGL_RS14605at 2731.099 kb on + strand, within SGL_RS14605at 2731.107 kb on - strand, within SGL_RS14605at 2731.348 kb on + strand, within SGL_RS14605at 2731.357 kb on + strand, within SGL_RS14605at 2731.435 kb on + strand, within SGL_RS14605at 2731.456 kb on + strand, within SGL_RS14605at 2731.643 kb on + strandat 2731.643 kb on + strandat 2731.651 kb on - strandat 2731.651 kb on - strandat 2731.705 kb on - strand, within SGL_RS14610at 2731.888 kb on - strand, within SGL_RS14610at 2731.916 kb on - strand, within SGL_RS14610at 2732.028 kb on + strand, within SGL_RS14610at 2732.036 kb on - strand, within SGL_RS14610at 2732.072 kb on - strand, within SGL_RS14610at 2732.134 kb on + strand, within SGL_RS14610at 2732.142 kb on - strand, within SGL_RS14610at 2732.161 kb on + strand, within SGL_RS14610at 2732.219 kb on - strand, within SGL_RS14610at 2732.478 kb on + strand, within SGL_RS14610

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,729,693 + SGL_RS14600 0.70 -3.3
2,729,721 - SGL_RS14600 0.72 -2.8
2,729,825 - SGL_RS14600 0.80 -0.9
2,729,849 - SGL_RS14600 0.82 +0.9
2,730,006 + -0.3
2,730,233 + -1.7
2,730,241 - -0.9
2,730,241 - -1.1
2,730,622 + +0.5
2,730,875 - SGL_RS14605 0.21 +0.8
2,730,932 - SGL_RS14605 0.28 +2.2
2,730,935 + SGL_RS14605 0.28 +0.5
2,731,016 - SGL_RS14605 0.37 +2.0
2,731,099 + SGL_RS14605 0.47 +1.7
2,731,107 - SGL_RS14605 0.48 +0.5
2,731,348 + SGL_RS14605 0.75 +1.1
2,731,357 + SGL_RS14605 0.76 +0.8
2,731,435 + SGL_RS14605 0.85 +1.8
2,731,456 + SGL_RS14605 0.88 +1.4
2,731,643 + -1.5
2,731,643 + -1.9
2,731,651 - -3.0
2,731,651 - -0.9
2,731,705 - SGL_RS14610 0.12 -1.1
2,731,888 - SGL_RS14610 0.27 -1.4
2,731,916 - SGL_RS14610 0.29 -3.4
2,732,028 + SGL_RS14610 0.39 -2.5
2,732,036 - SGL_RS14610 0.39 -1.0
2,732,072 - SGL_RS14610 0.42 -1.9
2,732,134 + SGL_RS14610 0.47 -0.9
2,732,142 - SGL_RS14610 0.48 -0.6
2,732,161 + SGL_RS14610 0.49 -0.7
2,732,219 - SGL_RS14610 0.54 -1.7
2,732,478 + SGL_RS14610 0.76 -1.8

Or see this region's nucleotide sequence