Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13015

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13005 and SGL_RS13010 are separated by 21 nucleotidesSGL_RS13010 and SGL_RS13015 are separated by 89 nucleotidesSGL_RS13015 and SGL_RS13020 are separated by 124 nucleotidesSGL_RS13020 and SGL_RS13025 overlap by 17 nucleotidesSGL_RS13025 and SGL_RS13030 are separated by 231 nucleotides SGL_RS13005: SGL_RS13005 - cysteine desulfurase family protein, at 2,391,547 to 2,392,707 _RS13005 SGL_RS13010: SGL_RS13010 - ComF family protein, at 2,392,729 to 2,393,403 _RS13010 SGL_RS13015: SGL_RS13015 - L,D-transpeptidase, at 2,393,493 to 2,394,107 _RS13015 SGL_RS13020: SGL_RS13020 - DUF433 domain-containing protein, at 2,394,232 to 2,394,552 _RS13020 SGL_RS13025: SGL_RS13025 - DUF5615 family PIN-like protein, at 2,394,536 to 2,394,871 _RS13025 SGL_RS13030: SGL_RS13030 - ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit B, at 2,395,103 to 2,396,629 _RS13030 Position (kb) 2393 2394 2395Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2392.569 kb on - strand, within SGL_RS13005at 2392.637 kb on - strandat 2392.685 kb on - strandat 2392.685 kb on - strandat 2392.987 kb on - strand, within SGL_RS13010at 2393.162 kb on - strand, within SGL_RS13010at 2393.180 kb on + strand, within SGL_RS13010at 2393.226 kb on + strand, within SGL_RS13010at 2393.511 kb on + strandat 2393.511 kb on + strandat 2393.511 kb on + strandat 2393.519 kb on - strandat 2393.550 kb on - strandat 2393.576 kb on - strand, within SGL_RS13015at 2393.588 kb on + strand, within SGL_RS13015at 2393.589 kb on + strand, within SGL_RS13015at 2393.674 kb on + strand, within SGL_RS13015at 2393.682 kb on - strand, within SGL_RS13015at 2393.692 kb on + strand, within SGL_RS13015at 2393.734 kb on - strand, within SGL_RS13015at 2394.164 kb on - strandat 2394.393 kb on - strand, within SGL_RS13020at 2394.490 kb on - strand, within SGL_RS13020at 2394.881 kb on - strandat 2394.916 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,392,569 - SGL_RS13005 0.88 -3.8
2,392,637 - -3.1
2,392,685 - +0.0
2,392,685 - -0.9
2,392,987 - SGL_RS13010 0.38 -0.2
2,393,162 - SGL_RS13010 0.64 +0.5
2,393,180 + SGL_RS13010 0.67 +0.1
2,393,226 + SGL_RS13010 0.74 -0.5
2,393,511 + +0.9
2,393,511 + +0.7
2,393,511 + +0.6
2,393,519 - +1.2
2,393,550 - +0.9
2,393,576 - SGL_RS13015 0.13 +0.5
2,393,588 + SGL_RS13015 0.15 +0.8
2,393,589 + SGL_RS13015 0.16 +0.7
2,393,674 + SGL_RS13015 0.29 +0.4
2,393,682 - SGL_RS13015 0.31 +1.1
2,393,692 + SGL_RS13015 0.32 +1.4
2,393,734 - SGL_RS13015 0.39 -0.9
2,394,164 - +0.8
2,394,393 - SGL_RS13020 0.50 -0.6
2,394,490 - SGL_RS13020 0.80 +0.4
2,394,881 - +0.3
2,394,916 + +0.4

Or see this region's nucleotide sequence