Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS13005 and SGL_RS13010 are separated by 21 nucleotides SGL_RS13010 and SGL_RS13015 are separated by 89 nucleotides SGL_RS13015 and SGL_RS13020 are separated by 124 nucleotides SGL_RS13020 and SGL_RS13025 overlap by 17 nucleotides SGL_RS13025 and SGL_RS13030 are separated by 231 nucleotides
SGL_RS13005: SGL_RS13005 - cysteine desulfurase family protein, at 2,391,547 to 2,392,707
_RS13005
SGL_RS13010: SGL_RS13010 - ComF family protein, at 2,392,729 to 2,393,403
_RS13010
SGL_RS13015: SGL_RS13015 - L,D-transpeptidase, at 2,393,493 to 2,394,107
_RS13015
SGL_RS13020: SGL_RS13020 - DUF433 domain-containing protein, at 2,394,232 to 2,394,552
_RS13020
SGL_RS13025: SGL_RS13025 - DUF5615 family PIN-like protein, at 2,394,536 to 2,394,871
_RS13025
SGL_RS13030: SGL_RS13030 - ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit B, at 2,395,103 to 2,396,629
_RS13030
Position (kb)
2393
2394
2395 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2392.569 kb on - strand, within SGL_RS13005 at 2392.637 kb on - strand at 2392.685 kb on - strand at 2392.685 kb on - strand at 2392.987 kb on - strand, within SGL_RS13010 at 2393.162 kb on - strand, within SGL_RS13010 at 2393.180 kb on + strand, within SGL_RS13010 at 2393.226 kb on + strand, within SGL_RS13010 at 2393.511 kb on + strand at 2393.511 kb on + strand at 2393.511 kb on + strand at 2393.519 kb on - strand at 2393.550 kb on - strand at 2393.576 kb on - strand, within SGL_RS13015 at 2393.588 kb on + strand, within SGL_RS13015 at 2393.589 kb on + strand, within SGL_RS13015 at 2393.674 kb on + strand, within SGL_RS13015 at 2393.682 kb on - strand, within SGL_RS13015 at 2393.692 kb on + strand, within SGL_RS13015 at 2393.734 kb on - strand, within SGL_RS13015 at 2394.164 kb on - strand at 2394.393 kb on - strand, within SGL_RS13020 at 2394.490 kb on - strand, within SGL_RS13020 at 2394.881 kb on - strand at 2394.916 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,392,569 - SGL_RS13005 0.88 -3.8 2,392,637 - -3.1 2,392,685 - +0.0 2,392,685 - -0.9 2,392,987 - SGL_RS13010 0.38 -0.2 2,393,162 - SGL_RS13010 0.64 +0.5 2,393,180 + SGL_RS13010 0.67 +0.1 2,393,226 + SGL_RS13010 0.74 -0.5 2,393,511 + +0.9 2,393,511 + +0.7 2,393,511 + +0.6 2,393,519 - +1.2 2,393,550 - +0.9 2,393,576 - SGL_RS13015 0.13 +0.5 2,393,588 + SGL_RS13015 0.15 +0.8 2,393,589 + SGL_RS13015 0.16 +0.7 2,393,674 + SGL_RS13015 0.29 +0.4 2,393,682 - SGL_RS13015 0.31 +1.1 2,393,692 + SGL_RS13015 0.32 +1.4 2,393,734 - SGL_RS13015 0.39 -0.9 2,394,164 - +0.8 2,394,393 - SGL_RS13020 0.50 -0.6 2,394,490 - SGL_RS13020 0.80 +0.4 2,394,881 - +0.3 2,394,916 + +0.4
Or see this region's nucleotide sequence