Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08070

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08065 and SGL_RS08070 are separated by 58 nucleotidesSGL_RS08070 and SGL_RS08075 are separated by 71 nucleotidesSGL_RS08075 and SGL_RS08080 are separated by 310 nucleotides SGL_RS08065: SGL_RS08065 - homogentisate phytyltransferase, at 1,322,687 to 1,323,613 _RS08065 SGL_RS08070: SGL_RS08070 - tocopherol cyclase family protein, at 1,323,672 to 1,324,763 _RS08070 SGL_RS08075: SGL_RS08075 - peroxiredoxin, at 1,324,835 to 1,325,404 _RS08075 SGL_RS08080: SGL_RS08080 - Fur family transcriptional regulator, at 1,325,715 to 1,326,134 _RS08080 Position (kb) 1323 1324 1325Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1322.744 kb on + strandat 1322.770 kb on - strandat 1322.799 kb on - strand, within SGL_RS08065at 1322.840 kb on - strand, within SGL_RS08065at 1322.874 kb on + strand, within SGL_RS08065at 1322.882 kb on - strand, within SGL_RS08065at 1322.954 kb on + strand, within SGL_RS08065at 1323.030 kb on + strand, within SGL_RS08065at 1323.030 kb on + strand, within SGL_RS08065at 1323.038 kb on - strand, within SGL_RS08065at 1323.179 kb on + strand, within SGL_RS08065at 1324.021 kb on - strand, within SGL_RS08070at 1324.036 kb on + strand, within SGL_RS08070at 1324.099 kb on - strand, within SGL_RS08070at 1324.131 kb on - strand, within SGL_RS08070at 1324.203 kb on + strand, within SGL_RS08070at 1324.260 kb on - strand, within SGL_RS08070at 1324.312 kb on + strand, within SGL_RS08070at 1324.345 kb on + strand, within SGL_RS08070at 1324.353 kb on - strand, within SGL_RS08070at 1324.394 kb on - strand, within SGL_RS08070at 1324.458 kb on + strand, within SGL_RS08070at 1324.594 kb on + strand, within SGL_RS08070at 1324.661 kb on + strandat 1324.671 kb on - strandat 1324.703 kb on - strandat 1324.762 kb on + strandat 1324.766 kb on + strandat 1324.776 kb on + strandat 1324.789 kb on - strandat 1324.812 kb on - strandat 1324.841 kb on - strandat 1324.903 kb on - strand, within SGL_RS08075at 1324.903 kb on - strand, within SGL_RS08075at 1324.943 kb on + strand, within SGL_RS08075at 1325.025 kb on - strand, within SGL_RS08075at 1325.238 kb on + strand, within SGL_RS08075at 1325.265 kb on + strand, within SGL_RS08075at 1325.619 kb on + strandat 1325.624 kb on + strandat 1325.632 kb on - strandat 1325.632 kb on - strandat 1325.718 kb on + strandat 1325.718 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,322,744 + -0.6
1,322,770 - -1.9
1,322,799 - SGL_RS08065 0.12 +0.8
1,322,840 - SGL_RS08065 0.17 +0.6
1,322,874 + SGL_RS08065 0.20 +0.4
1,322,882 - SGL_RS08065 0.21 -1.8
1,322,954 + SGL_RS08065 0.29 +1.2
1,323,030 + SGL_RS08065 0.37 -2.2
1,323,030 + SGL_RS08065 0.37 -0.4
1,323,038 - SGL_RS08065 0.38 +1.3
1,323,179 + SGL_RS08065 0.53 +0.3
1,324,021 - SGL_RS08070 0.32 +0.6
1,324,036 + SGL_RS08070 0.33 -1.0
1,324,099 - SGL_RS08070 0.39 -0.1
1,324,131 - SGL_RS08070 0.42 -0.1
1,324,203 + SGL_RS08070 0.49 -0.5
1,324,260 - SGL_RS08070 0.54 -1.6
1,324,312 + SGL_RS08070 0.59 -0.3
1,324,345 + SGL_RS08070 0.62 -0.9
1,324,353 - SGL_RS08070 0.62 -0.2
1,324,394 - SGL_RS08070 0.66 +0.2
1,324,458 + SGL_RS08070 0.72 -1.5
1,324,594 + SGL_RS08070 0.84 +0.2
1,324,661 + +0.1
1,324,671 - -0.8
1,324,703 - -0.1
1,324,762 + +1.2
1,324,766 + +1.1
1,324,776 + +0.6
1,324,789 - +0.4
1,324,812 - -0.4
1,324,841 - +0.8
1,324,903 - SGL_RS08075 0.12 +2.3
1,324,903 - SGL_RS08075 0.12 +2.5
1,324,943 + SGL_RS08075 0.19 +4.4
1,325,025 - SGL_RS08075 0.33 +3.0
1,325,238 + SGL_RS08075 0.71 +4.0
1,325,265 + SGL_RS08075 0.75 +4.3
1,325,619 + +0.5
1,325,624 + -0.8
1,325,632 - -0.8
1,325,632 - +0.7
1,325,718 + -3.1
1,325,718 + -3.1

Or see this region's nucleotide sequence