Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07285 and SGL_RS07290 overlap by 18 nucleotides SGL_RS07290 and SGL_RS07295 are separated by 180 nucleotides SGL_RS07295 and SGL_RS07300 are separated by 31 nucleotides
SGL_RS07285: SGL_RS07285 - N-acetylmuramoyl-L-alanine amidase, at 1,159,029 to 1,160,804
_RS07285
SGL_RS07290: SGL_RS07290 - M67 family metallopeptidase, at 1,160,787 to 1,161,260
_RS07290
SGL_RS07295: SGL_RS07295 - hypothetical protein, at 1,161,441 to 1,161,824
_RS07295
SGL_RS07300: SGL_RS07300 - site-2 protease family protein, at 1,161,856 to 1,163,367
_RS07300
Position (kb)
1161
1162 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 1160.496 kb on + strand, within SGL_RS07285 at 1160.596 kb on - strand, within SGL_RS07285 at 1160.862 kb on - strand, within SGL_RS07290 at 1160.931 kb on - strand, within SGL_RS07290 at 1161.040 kb on - strand, within SGL_RS07290 at 1161.118 kb on - strand, within SGL_RS07290 at 1161.538 kb on + strand, within SGL_RS07295 at 1161.572 kb on - strand, within SGL_RS07295 at 1161.572 kb on - strand, within SGL_RS07295 at 1161.584 kb on + strand, within SGL_RS07295 at 1161.732 kb on + strand, within SGL_RS07295 at 1161.732 kb on + strand, within SGL_RS07295 at 1161.740 kb on - strand, within SGL_RS07295 at 1161.758 kb on - strand, within SGL_RS07295 at 1161.758 kb on - strand, within SGL_RS07295 at 1161.862 kb on + strand at 1161.874 kb on + strand at 1161.929 kb on - strand at 1161.983 kb on - strand at 1162.028 kb on + strand, within SGL_RS07300 at 1162.060 kb on - strand, within SGL_RS07300 at 1162.128 kb on - strand, within SGL_RS07300 at 1162.212 kb on - strand, within SGL_RS07300 at 1162.248 kb on - strand, within SGL_RS07300 at 1162.268 kb on - strand, within SGL_RS07300 at 1162.815 kb on - strand, within SGL_RS07300
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,160,496 + SGL_RS07285 0.83 -5.5 1,160,596 - SGL_RS07285 0.88 -2.9 1,160,862 - SGL_RS07290 0.16 -0.1 1,160,931 - SGL_RS07290 0.30 -0.1 1,161,040 - SGL_RS07290 0.53 -1.6 1,161,118 - SGL_RS07290 0.70 -1.5 1,161,538 + SGL_RS07295 0.25 +0.6 1,161,572 - SGL_RS07295 0.34 +1.7 1,161,572 - SGL_RS07295 0.34 +1.5 1,161,584 + SGL_RS07295 0.37 +2.0 1,161,732 + SGL_RS07295 0.76 +2.0 1,161,732 + SGL_RS07295 0.76 +0.0 1,161,740 - SGL_RS07295 0.78 +2.5 1,161,758 - SGL_RS07295 0.83 +1.7 1,161,758 - SGL_RS07295 0.83 +1.4 1,161,862 + -0.0 1,161,874 + +1.1 1,161,929 - +1.2 1,161,983 - +1.9 1,162,028 + SGL_RS07300 0.11 +1.3 1,162,060 - SGL_RS07300 0.13 +1.2 1,162,128 - SGL_RS07300 0.18 +1.0 1,162,212 - SGL_RS07300 0.24 +2.4 1,162,248 - SGL_RS07300 0.26 -0.4 1,162,268 - SGL_RS07300 0.27 +3.2 1,162,815 - SGL_RS07300 0.63 +1.8
Or see this region's nucleotide sequence