Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02750 and SGL_RS02755 are separated by 235 nucleotides SGL_RS02755 and SGL_RS02760 are separated by 164 nucleotides SGL_RS02760 and SGL_RS02765 are separated by 79 nucleotides
SGL_RS02750: SGL_RS02750 - mechanosensitive ion channel family protein, at 186,601 to 188,892
_RS02750
SGL_RS02755: SGL_RS02755 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 189,128 to 189,715
_RS02755
SGL_RS02760: SGL_RS02760 - tRNA-Pro, at 189,880 to 189,953
_RS02760
SGL_RS02765: SGL_RS02765 - DUF429 domain-containing protein, at 190,033 to 190,818
_RS02765
Position (kb) 189
190 Strain fitness (log2 ratio) -2
-1
0
1 at 188.163 kb on + strand, within SGL_RS02750 at 188.171 kb on - strand, within SGL_RS02750 at 188.384 kb on - strand, within SGL_RS02750 at 188.396 kb on + strand, within SGL_RS02750 at 188.403 kb on + strand, within SGL_RS02750 at 188.411 kb on - strand, within SGL_RS02750 at 188.535 kb on - strand, within SGL_RS02750 at 188.839 kb on + strand at 188.896 kb on - strand at 189.046 kb on + strand at 189.064 kb on - strand at 189.258 kb on + strand, within SGL_RS02755 at 189.281 kb on - strand, within SGL_RS02755 at 189.717 kb on + strand at 189.723 kb on - strand at 189.770 kb on - strand at 189.805 kb on - strand at 190.051 kb on + strand at 190.186 kb on + strand, within SGL_RS02765 at 190.186 kb on + strand, within SGL_RS02765 at 190.588 kb on - strand, within SGL_RS02765 at 190.604 kb on - strand, within SGL_RS02765 at 190.606 kb on - strand, within SGL_RS02765 at 190.671 kb on - strand, within SGL_RS02765
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 188,163 + SGL_RS02750 0.68 +0.3 188,171 - SGL_RS02750 0.68 -0.9 188,384 - SGL_RS02750 0.78 -0.2 188,396 + SGL_RS02750 0.78 -0.4 188,403 + SGL_RS02750 0.79 -0.9 188,411 - SGL_RS02750 0.79 -0.1 188,535 - SGL_RS02750 0.84 -1.8 188,839 + +0.5 188,896 - -1.0 189,046 + +0.4 189,064 - -1.9 189,258 + SGL_RS02755 0.22 -0.9 189,281 - SGL_RS02755 0.26 -0.9 189,717 + -0.3 189,723 - -1.8 189,770 - -2.6 189,805 - +0.3 190,051 + -2.5 190,186 + SGL_RS02765 0.19 +0.2 190,186 + SGL_RS02765 0.19 +0.6 190,588 - SGL_RS02765 0.71 -0.8 190,604 - SGL_RS02765 0.73 -0.2 190,606 - SGL_RS02765 0.73 +0.4 190,671 - SGL_RS02765 0.81 -1.5
Or see this region's nucleotide sequence