Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS01785 and SGL_RS19740 are separated by 31 nucleotides SGL_RS19740 and SGL_RS19330 overlap by 50 nucleotides SGL_RS19330 and SGL_RS01795 are separated by 140 nucleotides SGL_RS01795 and SGL_RS01800 overlap by 8 nucleotides SGL_RS01800 and SGL_RS18620 are separated by 239 nucleotides
SGL_RS01785: SGL_RS01785 - hypothetical protein, at 82,861 to 86,385
_RS01785
SGL_RS19740: SGL_RS19740 - DNA cytosine methyltransferase, at 86,417 to 86,521
_RS19740
SGL_RS19330: SGL_RS19330 - hypothetical protein, at 86,472 to 86,870
_RS19330
SGL_RS01795: SGL_RS01795 - hypothetical protein, at 87,011 to 87,265
_RS01795
SGL_RS01800: SGL_RS01800 - ParA family protein, at 87,258 to 87,854
_RS01800
SGL_RS18620: SGL_RS18620 - HNH endonuclease, at 88,094 to 88,417
_RS18620
Position (kb) 87
88 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 86.235 kb on + strand at 86.303 kb on - strand at 86.493 kb on + strand at 86.574 kb on - strand, within SGL_RS19330 at 86.574 kb on - strand, within SGL_RS19330 at 86.642 kb on - strand, within SGL_RS19330 at 86.647 kb on - strand, within SGL_RS19330 at 86.708 kb on + strand, within SGL_RS19330 at 86.801 kb on - strand, within SGL_RS19330 at 86.875 kb on + strand at 86.883 kb on - strand at 87.052 kb on + strand, within SGL_RS01795 at 87.076 kb on - strand, within SGL_RS01795 at 87.086 kb on - strand, within SGL_RS01795 at 87.093 kb on - strand, within SGL_RS01795 at 87.204 kb on - strand, within SGL_RS01795 at 87.311 kb on - strand at 87.337 kb on - strand, within SGL_RS01800 at 87.338 kb on + strand, within SGL_RS01800 at 87.348 kb on - strand, within SGL_RS01800 at 87.366 kb on - strand, within SGL_RS01800 at 87.407 kb on + strand, within SGL_RS01800 at 87.448 kb on + strand, within SGL_RS01800 at 87.562 kb on - strand, within SGL_RS01800 at 87.637 kb on - strand, within SGL_RS01800 at 87.665 kb on + strand, within SGL_RS01800 at 87.718 kb on + strand, within SGL_RS01800 at 87.726 kb on - strand, within SGL_RS01800 at 87.726 kb on - strand, within SGL_RS01800 at 87.736 kb on - strand, within SGL_RS01800 at 87.738 kb on + strand, within SGL_RS01800 at 87.738 kb on + strand, within SGL_RS01800 at 87.794 kb on + strand, within SGL_RS01800 at 87.802 kb on - strand at 87.802 kb on - strand at 87.973 kb on - strand at 88.017 kb on + strand at 88.105 kb on + strand at 88.189 kb on - strand, within SGL_RS18620 at 88.202 kb on - strand, within SGL_RS18620
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 86,235 + -1.3 86,303 - +0.9 86,493 + -0.2 86,574 - SGL_RS19330 0.26 +1.2 86,574 - SGL_RS19330 0.26 -1.2 86,642 - SGL_RS19330 0.43 -1.8 86,647 - SGL_RS19330 0.44 +0.2 86,708 + SGL_RS19330 0.59 +0.5 86,801 - SGL_RS19330 0.82 -1.2 86,875 + -0.4 86,883 - +0.8 87,052 + SGL_RS01795 0.16 -0.1 87,076 - SGL_RS01795 0.25 -2.0 87,086 - SGL_RS01795 0.29 -1.4 87,093 - SGL_RS01795 0.32 +1.1 87,204 - SGL_RS01795 0.76 -1.8 87,311 - -2.0 87,337 - SGL_RS01800 0.13 +1.4 87,338 + SGL_RS01800 0.13 -1.7 87,348 - SGL_RS01800 0.15 -0.9 87,366 - SGL_RS01800 0.18 -1.5 87,407 + SGL_RS01800 0.25 -0.6 87,448 + SGL_RS01800 0.32 -1.0 87,562 - SGL_RS01800 0.51 -0.9 87,637 - SGL_RS01800 0.63 -0.1 87,665 + SGL_RS01800 0.68 -1.0 87,718 + SGL_RS01800 0.77 +5.7 87,726 - SGL_RS01800 0.78 -0.5 87,726 - SGL_RS01800 0.78 +0.8 87,736 - SGL_RS01800 0.80 -1.5 87,738 + SGL_RS01800 0.80 +0.6 87,738 + SGL_RS01800 0.80 -1.1 87,794 + SGL_RS01800 0.90 -1.5 87,802 - -0.4 87,802 - +0.6 87,973 - -1.9 88,017 + +0.1 88,105 + +0.7 88,189 - SGL_RS18620 0.29 +0.7 88,202 - SGL_RS18620 0.33 +0.7
Or see this region's nucleotide sequence