Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17835

Experiment: medium light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS17830 and SGL_RS17835 are separated by 383 nucleotidesSGL_RS17835 and SGL_RS17840 are separated by 42 nucleotidesSGL_RS17840 and SGL_RS17845 are separated by 62 nucleotides SGL_RS17830: SGL_RS17830 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase, at 3,458,330 to 3,459,397 _RS17830 SGL_RS17835: SGL_RS17835 - diguanylate cyclase, at 3,459,781 to 3,460,608 _RS17835 SGL_RS17840: SGL_RS17840 - hypothetical protein, at 3,460,651 to 3,461,250 _RS17840 SGL_RS17845: SGL_RS17845 - hypothetical protein, at 3,461,313 to 3,461,654 _RS17845 Position (kb) 3459 3460 3461Strain fitness (log2 ratio) -2 -1 0 1 2at 3459.410 kb on - strandat 3459.525 kb on + strandat 3459.636 kb on - strandat 3459.638 kb on + strandat 3460.125 kb on + strand, within SGL_RS17835at 3460.190 kb on - strand, within SGL_RS17835at 3460.380 kb on + strand, within SGL_RS17835at 3460.404 kb on - strand, within SGL_RS17835at 3460.503 kb on + strand, within SGL_RS17835at 3460.537 kb on - strandat 3460.582 kb on + strandat 3460.582 kb on + strandat 3460.636 kb on + strandat 3460.636 kb on - strandat 3460.655 kb on + strandat 3460.775 kb on + strand, within SGL_RS17840at 3460.802 kb on - strand, within SGL_RS17840at 3460.847 kb on + strand, within SGL_RS17840at 3460.883 kb on + strand, within SGL_RS17840at 3460.941 kb on - strand, within SGL_RS17840at 3460.960 kb on - strand, within SGL_RS17840at 3461.229 kb on - strandat 3461.244 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
remove
3,459,410 - -0.6
3,459,525 + -0.9
3,459,636 - +2.1
3,459,638 + -1.8
3,460,125 + SGL_RS17835 0.42 -1.5
3,460,190 - SGL_RS17835 0.49 +0.0
3,460,380 + SGL_RS17835 0.72 +0.7
3,460,404 - SGL_RS17835 0.75 +0.1
3,460,503 + SGL_RS17835 0.87 -1.3
3,460,537 - -0.9
3,460,582 + -1.6
3,460,582 + -0.2
3,460,636 + +0.1
3,460,636 - +1.5
3,460,655 + -2.6
3,460,775 + SGL_RS17840 0.21 -0.1
3,460,802 - SGL_RS17840 0.25 +0.9
3,460,847 + SGL_RS17840 0.33 -0.1
3,460,883 + SGL_RS17840 0.39 +0.1
3,460,941 - SGL_RS17840 0.48 -2.1
3,460,960 - SGL_RS17840 0.52 +0.3
3,461,229 - -1.4
3,461,244 + -0.8

Or see this region's nucleotide sequence