Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02270

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS02265 and SGL_RS02270 are separated by 230 nucleotidesSGL_RS02270 and SGL_RS02275 are separated by 105 nucleotides SGL_RS02265: SGL_RS02265 - transglutaminase family protein, at 88,818 to 90,506 _RS02265 SGL_RS02270: SGL_RS02270 - hypothetical protein, at 90,737 to 91,411 _RS02270 SGL_RS02275: SGL_RS02275 - SPFH domain-containing protein, at 91,517 to 92,482 _RS02275 Position (kb) 90 91 92Strain fitness (log2 ratio) -2 -1 0 1 2 3at 89.758 kb on - strand, within SGL_RS02265at 89.760 kb on - strand, within SGL_RS02265at 89.793 kb on + strand, within SGL_RS02265at 89.796 kb on - strand, within SGL_RS02265at 89.800 kb on - strand, within SGL_RS02265at 89.861 kb on - strand, within SGL_RS02265at 89.861 kb on - strand, within SGL_RS02265at 89.955 kb on - strand, within SGL_RS02265at 90.013 kb on - strand, within SGL_RS02265at 90.013 kb on - strand, within SGL_RS02265at 90.115 kb on + strand, within SGL_RS02265at 90.144 kb on + strand, within SGL_RS02265at 90.144 kb on + strand, within SGL_RS02265at 90.144 kb on + strand, within SGL_RS02265at 90.144 kb on + strand, within SGL_RS02265at 90.144 kb on + strand, within SGL_RS02265at 90.144 kb on + strand, within SGL_RS02265at 90.248 kb on - strand, within SGL_RS02265at 90.262 kb on - strand, within SGL_RS02265at 90.273 kb on - strand, within SGL_RS02265at 90.275 kb on + strand, within SGL_RS02265at 90.341 kb on - strandat 90.390 kb on + strandat 90.405 kb on - strandat 90.440 kb on - strandat 90.445 kb on - strandat 90.537 kb on + strandat 90.552 kb on - strandat 90.601 kb on + strandat 90.639 kb on - strandat 90.799 kb on + strandat 90.860 kb on + strand, within SGL_RS02270at 90.895 kb on + strand, within SGL_RS02270at 90.899 kb on - strand, within SGL_RS02270at 90.920 kb on + strand, within SGL_RS02270at 91.053 kb on - strand, within SGL_RS02270at 91.055 kb on - strand, within SGL_RS02270at 91.112 kb on + strand, within SGL_RS02270at 91.137 kb on + strand, within SGL_RS02270at 91.166 kb on - strand, within SGL_RS02270at 91.224 kb on - strand, within SGL_RS02270at 91.266 kb on + strand, within SGL_RS02270at 91.266 kb on + strand, within SGL_RS02270at 91.279 kb on - strand, within SGL_RS02270at 91.293 kb on + strand, within SGL_RS02270at 91.371 kb on - strandat 91.615 kb on + strand, within SGL_RS02275at 91.646 kb on + strand, within SGL_RS02275at 91.968 kb on - strand, within SGL_RS02275at 91.998 kb on + strand, within SGL_RS02275at 92.016 kb on - strand, within SGL_RS02275at 92.069 kb on + strand, within SGL_RS02275at 92.354 kb on + strand, within SGL_RS02275at 92.408 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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89,758 - SGL_RS02265 0.56 -1.3
89,760 - SGL_RS02265 0.56 -2.4
89,793 + SGL_RS02265 0.58 -0.7
89,796 - SGL_RS02265 0.58 -2.7
89,800 - SGL_RS02265 0.58 -2.6
89,861 - SGL_RS02265 0.62 -0.2
89,861 - SGL_RS02265 0.62 -1.7
89,955 - SGL_RS02265 0.67 -0.3
90,013 - SGL_RS02265 0.71 -2.1
90,013 - SGL_RS02265 0.71 -0.7
90,115 + SGL_RS02265 0.77 -0.7
90,144 + SGL_RS02265 0.79 +1.5
90,144 + SGL_RS02265 0.79 -1.5
90,144 + SGL_RS02265 0.79 -0.2
90,144 + SGL_RS02265 0.79 -1.8
90,144 + SGL_RS02265 0.79 -0.1
90,144 + SGL_RS02265 0.79 +0.2
90,248 - SGL_RS02265 0.85 -0.9
90,262 - SGL_RS02265 0.85 +0.9
90,273 - SGL_RS02265 0.86 +0.2
90,275 + SGL_RS02265 0.86 -2.1
90,341 - -2.7
90,390 + -0.9
90,405 - -0.6
90,440 - -0.5
90,445 - +1.4
90,537 + -0.9
90,552 - +0.5
90,601 + +0.8
90,639 - +0.8
90,799 + +2.1
90,860 + SGL_RS02270 0.18 +0.8
90,895 + SGL_RS02270 0.23 +1.1
90,899 - SGL_RS02270 0.24 +1.4
90,920 + SGL_RS02270 0.27 +1.2
91,053 - SGL_RS02270 0.47 +1.1
91,055 - SGL_RS02270 0.47 +0.7
91,112 + SGL_RS02270 0.56 +1.3
91,137 + SGL_RS02270 0.59 +2.3
91,166 - SGL_RS02270 0.64 +0.7
91,224 - SGL_RS02270 0.72 +1.9
91,266 + SGL_RS02270 0.78 +3.0
91,266 + SGL_RS02270 0.78 +1.3
91,279 - SGL_RS02270 0.80 +1.3
91,293 + SGL_RS02270 0.82 +1.6
91,371 - +1.4
91,615 + SGL_RS02275 0.10 +1.1
91,646 + SGL_RS02275 0.13 -0.1
91,968 - SGL_RS02275 0.47 +2.0
91,998 + SGL_RS02275 0.50 +1.2
92,016 - SGL_RS02275 0.52 +1.8
92,069 + SGL_RS02275 0.57 +2.5
92,354 + SGL_RS02275 0.87 +2.2
92,408 + +1.0

Or see this region's nucleotide sequence