Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15830

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15825 and SGL_RS15830 are separated by 225 nucleotidesSGL_RS15830 and SGL_RS15835 are separated by 332 nucleotides SGL_RS15825: SGL_RS15825 - phosphomethylpyrimidine synthase, at 2,999,181 to 3,000,560 _RS15825 SGL_RS15830: SGL_RS15830 - YihY/virulence factor BrkB family protein, at 3,000,786 to 3,001,742 _RS15830 SGL_RS15835: SGL_RS15835 - TrmJ/YjtD family RNA methyltransferase, at 3,002,075 to 3,002,797 _RS15835 Position (kb) 3000 3001 3002Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 3000.561 kb on + strandat 3000.669 kb on - strandat 3000.733 kb on + strandat 3000.744 kb on + strandat 3000.789 kb on - strandat 3001.930 kb on + strandat 3001.930 kb on + strandat 3002.186 kb on + strand, within SGL_RS15835at 3002.227 kb on + strand, within SGL_RS15835at 3002.289 kb on + strand, within SGL_RS15835at 3002.297 kb on - strand, within SGL_RS15835at 3002.370 kb on - strand, within SGL_RS15835at 3002.407 kb on - strand, within SGL_RS15835at 3002.407 kb on - strand, within SGL_RS15835at 3002.422 kb on - strand, within SGL_RS15835at 3002.445 kb on + strand, within SGL_RS15835at 3002.451 kb on - strand, within SGL_RS15835at 3002.462 kb on - strand, within SGL_RS15835at 3002.499 kb on + strand, within SGL_RS15835at 3002.571 kb on - strand, within SGL_RS15835at 3002.587 kb on - strand, within SGL_RS15835at 3002.613 kb on - strand, within SGL_RS15835at 3002.619 kb on - strand, within SGL_RS15835at 3002.630 kb on + strand, within SGL_RS15835at 3002.735 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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3,000,561 + -0.5
3,000,669 - -0.2
3,000,733 + -0.3
3,000,744 + -0.1
3,000,789 - -0.3
3,001,930 + -0.9
3,001,930 + +0.2
3,002,186 + SGL_RS15835 0.15 -3.5
3,002,227 + SGL_RS15835 0.21 -6.0
3,002,289 + SGL_RS15835 0.30 -4.0
3,002,297 - SGL_RS15835 0.31 -4.5
3,002,370 - SGL_RS15835 0.41 -4.5
3,002,407 - SGL_RS15835 0.46 -3.7
3,002,407 - SGL_RS15835 0.46 -4.3
3,002,422 - SGL_RS15835 0.48 -7.2
3,002,445 + SGL_RS15835 0.51 -6.6
3,002,451 - SGL_RS15835 0.52 -7.0
3,002,462 - SGL_RS15835 0.54 -2.7
3,002,499 + SGL_RS15835 0.59 -5.2
3,002,571 - SGL_RS15835 0.69 -4.0
3,002,587 - SGL_RS15835 0.71 -5.0
3,002,613 - SGL_RS15835 0.74 -4.8
3,002,619 - SGL_RS15835 0.75 -4.0
3,002,630 + SGL_RS15835 0.77 -5.0
3,002,735 - -3.3

Or see this region's nucleotide sequence