Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS18170 and SGL_RS18175 are separated by 35 nucleotides SGL_RS18175 and SGL_RS18180 are separated by 7 nucleotides SGL_RS18180 and SGL_RS18185 are separated by 129 nucleotides SGL_RS18185 and SGL_RS18190 are separated by 199 nucleotides
SGL_RS18170: SGL_RS18170 - PspA/IM30 family protein, at 3,529,323 to 3,529,994
_RS18170
SGL_RS18175: SGL_RS18175 - homocysteine S-methyltransferase family protein, at 3,530,030 to 3,530,971
_RS18175
SGL_RS18180: SGL_RS18180 - ABC transporter permease, at 3,530,979 to 3,531,755
_RS18180
SGL_RS18185: SGL_RS18185 - DUF1269 domain-containing protein, at 3,531,885 to 3,532,400
_RS18185
SGL_RS18190: SGL_RS18190 - NAD(P)-dependent alcohol dehydrogenase, at 3,532,600 to 3,533,610
_RS18190
Position (kb)
3530
3531
3532 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3530.136 kb on + strand, within SGL_RS18175 at 3530.361 kb on + strand, within SGL_RS18175 at 3530.384 kb on + strand, within SGL_RS18175 at 3530.400 kb on + strand, within SGL_RS18175 at 3530.452 kb on - strand, within SGL_RS18175 at 3530.493 kb on - strand, within SGL_RS18175 at 3530.622 kb on - strand, within SGL_RS18175 at 3531.056 kb on - strand at 3531.133 kb on - strand, within SGL_RS18180 at 3531.494 kb on + strand, within SGL_RS18180 at 3531.538 kb on - strand, within SGL_RS18180 at 3531.586 kb on - strand, within SGL_RS18180 at 3531.652 kb on - strand, within SGL_RS18180 at 3531.885 kb on - strand at 3531.934 kb on + strand at 3532.238 kb on + strand, within SGL_RS18185 at 3532.258 kb on - strand, within SGL_RS18185 at 3532.269 kb on - strand, within SGL_RS18185 at 3532.291 kb on - strand, within SGL_RS18185 at 3532.508 kb on - strand at 3532.519 kb on + strand at 3532.547 kb on + strand at 3532.555 kb on - strand at 3532.608 kb on + strand at 3532.608 kb on + strand at 3532.639 kb on + strand at 3532.679 kb on - strand at 3532.701 kb on + strand, within SGL_RS18190 at 3532.709 kb on - strand, within SGL_RS18190 at 3532.709 kb on - strand, within SGL_RS18190 at 3532.709 kb on - strand, within SGL_RS18190 at 3532.711 kb on - strand, within SGL_RS18190 at 3532.711 kb on - strand, within SGL_RS18190
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 3,530,136 + SGL_RS18175 0.11 -0.4 3,530,361 + SGL_RS18175 0.35 -0.4 3,530,384 + SGL_RS18175 0.38 +1.5 3,530,400 + SGL_RS18175 0.39 -0.0 3,530,452 - SGL_RS18175 0.45 -0.8 3,530,493 - SGL_RS18175 0.49 -0.1 3,530,622 - SGL_RS18175 0.63 +0.1 3,531,056 - -3.2 3,531,133 - SGL_RS18180 0.20 -3.6 3,531,494 + SGL_RS18180 0.66 -3.2 3,531,538 - SGL_RS18180 0.72 -3.9 3,531,586 - SGL_RS18180 0.78 -3.2 3,531,652 - SGL_RS18180 0.87 -4.1 3,531,885 - -0.2 3,531,934 + +0.0 3,532,238 + SGL_RS18185 0.68 +0.5 3,532,258 - SGL_RS18185 0.72 -1.5 3,532,269 - SGL_RS18185 0.74 -2.3 3,532,291 - SGL_RS18185 0.79 -0.4 3,532,508 - -1.2 3,532,519 + -0.4 3,532,547 + -0.1 3,532,555 - +1.4 3,532,608 + +0.3 3,532,608 + -0.0 3,532,639 + -0.1 3,532,679 - -0.3 3,532,701 + SGL_RS18190 0.10 -1.3 3,532,709 - SGL_RS18190 0.11 -0.3 3,532,709 - SGL_RS18190 0.11 +0.1 3,532,709 - SGL_RS18190 0.11 -0.5 3,532,711 - SGL_RS18190 0.11 +0.2 3,532,711 - SGL_RS18190 0.11 -0.2
Or see this region's nucleotide sequence