Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17895 and SGL_RS17900 are separated by 23 nucleotides SGL_RS17900 and SGL_RS17905 are separated by 27 nucleotides SGL_RS17905 and SGL_RS19140 are separated by 607 nucleotides SGL_RS19140 and SGL_RS19525 overlap by 48 nucleotides SGL_RS19525 and SGL_RS17920 overlap by 4 nucleotides
SGL_RS17895: SGL_RS17895 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 3,472,053 to 3,473,210
_RS17895
SGL_RS17900: SGL_RS17900 - hypothetical protein, at 3,473,234 to 3,473,485
_RS17900
SGL_RS17905: SGL_RS17905 - response regulator transcription factor, at 3,473,513 to 3,474,199
_RS17905
SGL_RS19140: SGL_RS19140 - DUF433 domain-containing protein, at 3,474,807 to 3,474,998
_RS19140
SGL_RS19525: SGL_RS19525 - hypothetical protein, at 3,474,951 to 3,475,184
_RS19525
SGL_RS17920: SGL_RS17920 - PIN domain-containing protein, at 3,475,181 to 3,475,618
_RS17920
Position (kb) 3473
3474
3475 Strain fitness (log2 ratio) -1
0
1
2 at 3473.293 kb on - strand, within SGL_RS17900 at 3473.306 kb on - strand, within SGL_RS17900 at 3473.378 kb on + strand, within SGL_RS17900 at 3473.616 kb on - strand, within SGL_RS17905 at 3473.846 kb on - strand, within SGL_RS17905 at 3473.851 kb on - strand, within SGL_RS17905 at 3473.900 kb on - strand, within SGL_RS17905 at 3473.965 kb on - strand, within SGL_RS17905 at 3474.196 kb on - strand at 3474.595 kb on - strand at 3474.698 kb on - strand at 3474.744 kb on - strand at 3474.844 kb on - strand, within SGL_RS19140 at 3474.943 kb on + strand, within SGL_RS19140 at 3474.950 kb on - strand, within SGL_RS19140 at 3474.992 kb on + strand at 3475.038 kb on - strand, within SGL_RS19525
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 3,473,293 - SGL_RS17900 0.23 +1.5 3,473,306 - SGL_RS17900 0.29 +1.4 3,473,378 + SGL_RS17900 0.57 +2.2 3,473,616 - SGL_RS17905 0.15 +0.2 3,473,846 - SGL_RS17905 0.48 +0.6 3,473,851 - SGL_RS17905 0.49 +1.0 3,473,900 - SGL_RS17905 0.56 +0.1 3,473,965 - SGL_RS17905 0.66 +0.0 3,474,196 - +0.0 3,474,595 - -0.7 3,474,698 - +0.4 3,474,744 - -0.0 3,474,844 - SGL_RS19140 0.19 -0.1 3,474,943 + SGL_RS19140 0.71 -1.1 3,474,950 - SGL_RS19140 0.74 +0.0 3,474,992 + -0.1 3,475,038 - SGL_RS19525 0.37 -1.6
Or see this region's nucleotide sequence