Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13970

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13965 and SGL_RS19035 overlap by 50 nucleotidesSGL_RS19035 and SGL_RS13970 are separated by 15 nucleotidesSGL_RS13970 and SGL_RS13975 are separated by 220 nucleotides SGL_RS13965: SGL_RS13965 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 2,594,055 to 2,595,161 _RS13965 SGL_RS19035: SGL_RS19035 - DUF2256 domain-containing protein, at 2,595,112 to 2,595,264 _RS19035 SGL_RS13970: SGL_RS13970 - pitrilysin family protein, at 2,595,280 to 2,596,566 _RS13970 SGL_RS13975: SGL_RS13975 - Mrp/NBP35 family ATP-binding protein, at 2,596,787 to 2,597,848 _RS13975 Position (kb) 2595 2596 2597Strain fitness (log2 ratio) -1 0 1at 2594.431 kb on + strand, within SGL_RS13965at 2594.561 kb on - strand, within SGL_RS13965at 2594.644 kb on - strand, within SGL_RS13965at 2594.945 kb on + strand, within SGL_RS13965at 2595.101 kb on + strandat 2595.121 kb on + strandat 2595.157 kb on - strandat 2595.299 kb on + strandat 2595.386 kb on + strandat 2595.391 kb on + strandat 2595.391 kb on + strandat 2595.394 kb on - strandat 2595.399 kb on - strandat 2595.426 kb on + strand, within SGL_RS13970at 2595.619 kb on - strand, within SGL_RS13970at 2595.625 kb on - strand, within SGL_RS13970at 2595.630 kb on - strand, within SGL_RS13970at 2595.773 kb on - strand, within SGL_RS13970at 2595.863 kb on + strand, within SGL_RS13970at 2595.863 kb on + strand, within SGL_RS13970at 2595.863 kb on + strand, within SGL_RS13970at 2595.933 kb on + strand, within SGL_RS13970at 2596.060 kb on - strand, within SGL_RS13970at 2596.248 kb on - strand, within SGL_RS13970at 2596.281 kb on + strand, within SGL_RS13970at 2596.294 kb on - strand, within SGL_RS13970at 2596.481 kb on - strandat 2596.616 kb on + strandat 2596.618 kb on + strandat 2596.626 kb on - strandat 2596.631 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,594,431 + SGL_RS13965 0.34 +0.0
2,594,561 - SGL_RS13965 0.46 -0.3
2,594,644 - SGL_RS13965 0.53 -0.6
2,594,945 + SGL_RS13965 0.80 -1.4
2,595,101 + -1.0
2,595,121 + -1.4
2,595,157 - -1.3
2,595,299 + +0.7
2,595,386 + +1.1
2,595,391 + +0.5
2,595,391 + +1.5
2,595,394 - +1.2
2,595,399 - +0.7
2,595,426 + SGL_RS13970 0.11 +0.4
2,595,619 - SGL_RS13970 0.26 +1.0
2,595,625 - SGL_RS13970 0.27 +1.1
2,595,630 - SGL_RS13970 0.27 +1.3
2,595,773 - SGL_RS13970 0.38 +1.1
2,595,863 + SGL_RS13970 0.45 -0.5
2,595,863 + SGL_RS13970 0.45 +1.6
2,595,863 + SGL_RS13970 0.45 +0.0
2,595,933 + SGL_RS13970 0.51 +1.1
2,596,060 - SGL_RS13970 0.61 +0.7
2,596,248 - SGL_RS13970 0.75 +0.8
2,596,281 + SGL_RS13970 0.78 +1.0
2,596,294 - SGL_RS13970 0.79 +1.1
2,596,481 - +0.6
2,596,616 + +0.7
2,596,618 + +0.1
2,596,626 - +0.8
2,596,631 - +0.2

Or see this region's nucleotide sequence