Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09490

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09480 and SGL_RS09485 are separated by 105 nucleotidesSGL_RS09485 and SGL_RS09490 overlap by 11 nucleotidesSGL_RS09490 and SGL_RS19865 are separated by 69 nucleotidesSGL_RS19865 and SGL_RS18860 overlap by 91 nucleotidesSGL_RS18860 and SGL_RS09505 overlap by 32 nucleotides SGL_RS09480: SGL_RS09480 - IS4-like element IS4Sa family transposase, at 1,624,643 to 1,625,095 _RS09480 SGL_RS09485: SGL_RS09485 - sugar phosphate isomerase/epimerase, at 1,625,201 to 1,625,632 _RS09485 SGL_RS09490: SGL_RS09490 - CBS domain-containing protein, at 1,625,622 to 1,626,095 _RS09490 SGL_RS19865: SGL_RS19865 - IS630 transposase-related protein, at 1,626,165 to 1,626,524 _RS19865 SGL_RS18860: SGL_RS18860 - IS630 family transposase, at 1,626,434 to 1,627,012 _RS18860 SGL_RS09505: SGL_RS09505 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 1,626,981 to 1,628,018 _RS09505 Position (kb) 1625 1626 1627Strain fitness (log2 ratio) -1 0 1at 1624.666 kb on - strandat 1625.182 kb on + strandat 1625.182 kb on + strandat 1625.318 kb on + strand, within SGL_RS09485at 1625.889 kb on + strand, within SGL_RS09490at 1625.897 kb on - strand, within SGL_RS09490at 1625.907 kb on + strand, within SGL_RS09490at 1626.001 kb on - strand, within SGL_RS09490at 1626.001 kb on - strand, within SGL_RS09490

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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1,624,666 - -0.8
1,625,182 + +0.9
1,625,182 + +0.5
1,625,318 + SGL_RS09485 0.27 -0.9
1,625,889 + SGL_RS09490 0.56 +0.2
1,625,897 - SGL_RS09490 0.58 +0.3
1,625,907 + SGL_RS09490 0.60 +0.5
1,626,001 - SGL_RS09490 0.80 +0.5
1,626,001 - SGL_RS09490 0.80 +0.5

Or see this region's nucleotide sequence