Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03340

Experiment: medium light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS03330 and SGL_RS03335 are separated by 55 nucleotidesSGL_RS03335 and SGL_RS03340 are separated by 27 nucleotidesSGL_RS03340 and SGL_RS03345 are separated by 97 nucleotides SGL_RS03330: SGL_RS03330 - cupin domain-containing protein, at 313,705 to 314,199 _RS03330 SGL_RS03335: SGL_RS03335 - prolipoprotein diacylglyceryl transferase, at 314,255 to 315,106 _RS03335 SGL_RS03340: SGL_RS03340 - Uma2 family endonuclease, at 315,134 to 315,784 _RS03340 SGL_RS03345: SGL_RS03345 - oxygen-dependent coproporphyrinogen oxidase, at 315,882 to 316,904 _RS03345 Position (kb) 315 316Strain fitness (log2 ratio) -1 0 1at 315.217 kb on + strand, within SGL_RS03340at 315.290 kb on + strand, within SGL_RS03340at 315.442 kb on + strand, within SGL_RS03340at 315.775 kb on - strandat 315.855 kb on + strandat 315.863 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
remove
315,217 + SGL_RS03340 0.13 +1.1
315,290 + SGL_RS03340 0.24 +1.1
315,442 + SGL_RS03340 0.47 +0.7
315,775 - +0.8
315,855 + +0.6
315,863 - +0.5

Or see this region's nucleotide sequence