Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS04690 and SGL_RS04695 are separated by 236 nucleotides SGL_RS04695 and SGL_RS20210 are separated by 254 nucleotides SGL_RS20210 and SGL_RS20215 overlap by 7 nucleotides SGL_RS20215 and SGL_RS04705 are separated by 136 nucleotides
SGL_RS04690: SGL_RS04690 - serine hydroxymethyltransferase, at 603,443 to 604,726
_RS04690
SGL_RS04695: SGL_RS04695 - IS1 family transposase, at 604,963 to 605,286
_RS04695
SGL_RS20210: SGL_RS20210 - IS630 family transposase, at 605,541 to 606,035
_RS20210
SGL_RS20215: SGL_RS20215 - IS630 transposase-related protein, at 606,029 to 606,328
_RS20215
SGL_RS04705: SGL_RS04705 - ComEC/Rec2 family competence protein, at 606,465 to 608,594
_RS04705
Position (kb) 605
606
607 Strain fitness (log2 ratio) -1
0
1 at 604.860 kb on + strand at 604.930 kb on + strand at 605.005 kb on - strand, within SGL_RS04695 at 605.054 kb on + strand, within SGL_RS04695 at 605.061 kb on - strand, within SGL_RS04695 at 605.204 kb on + strand, within SGL_RS04695 at 605.481 kb on - strand at 606.509 kb on + strand at 606.517 kb on - strand at 606.537 kb on - strand at 606.537 kb on - strand at 606.587 kb on + strand at 606.595 kb on - strand at 606.619 kb on - strand at 606.650 kb on - strand at 606.797 kb on - strand, within SGL_RS04705 at 606.924 kb on - strand, within SGL_RS04705
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 604,860 + +0.3 604,930 + -0.4 605,005 - SGL_RS04695 0.13 +0.8 605,054 + SGL_RS04695 0.28 -0.1 605,061 - SGL_RS04695 0.30 +0.4 605,204 + SGL_RS04695 0.74 +0.8 605,481 - -0.2 606,509 + +0.1 606,517 - +0.2 606,537 - +0.9 606,537 - +0.2 606,587 + -0.3 606,595 - -0.1 606,619 - +0.1 606,650 - -0.0 606,797 - SGL_RS04705 0.16 +0.3 606,924 - SGL_RS04705 0.22 +0.0
Or see this region's nucleotide sequence