Experiment: control for light_bubbling experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03245 and SGL_RS03250 are separated by 81 nucleotides SGL_RS03250 and SGL_RS19555 are separated by 10 nucleotides SGL_RS19555 and SGL_RS03255 are separated by 208 nucleotides
SGL_RS03245: SGL_RS03245 - Fe(3+) ABC transporter substrate-binding protein, at 291,626 to 292,708
_RS03245
SGL_RS03250: SGL_RS03250 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 292,790 to 293,485
_RS03250
SGL_RS19555: SGL_RS19555 - hypothetical protein, at 293,496 to 293,669
_RS19555
SGL_RS03255: SGL_RS03255 - ATP-dependent 6-phosphofructokinase, at 293,878 to 294,963
_RS03255
Position (kb) 293
294 Strain fitness (log2 ratio) -1
0
1 at 292.509 kb on + strand, within SGL_RS03245 at 292.659 kb on - strand at 292.661 kb on + strand at 292.669 kb on - strand at 292.669 kb on - strand at 292.781 kb on + strand at 292.895 kb on - strand, within SGL_RS03250 at 292.923 kb on + strand, within SGL_RS03250 at 293.154 kb on + strand, within SGL_RS03250 at 293.167 kb on - strand, within SGL_RS03250 at 293.227 kb on - strand, within SGL_RS03250 at 293.227 kb on - strand, within SGL_RS03250 at 293.330 kb on - strand, within SGL_RS03250 at 293.412 kb on + strand, within SGL_RS03250 at 293.585 kb on - strand, within SGL_RS19555 at 293.607 kb on - strand, within SGL_RS19555 at 293.698 kb on + strand at 293.859 kb on + strand at 293.986 kb on + strand at 294.065 kb on + strand, within SGL_RS03255 at 294.065 kb on + strand, within SGL_RS03255 at 294.087 kb on - strand, within SGL_RS03255 at 294.123 kb on - strand, within SGL_RS03255 at 294.226 kb on - strand, within SGL_RS03255 at 294.232 kb on + strand, within SGL_RS03255 at 294.245 kb on - strand, within SGL_RS03255 at 294.261 kb on + strand, within SGL_RS03255 at 294.318 kb on + strand, within SGL_RS03255 at 294.577 kb on + strand, within SGL_RS03255 at 294.613 kb on + strand, within SGL_RS03255
Per-strain Table
Position Strand Gene LocusTag Fraction control for light_bubbling experiments remove 292,509 + SGL_RS03245 0.82 +1.7 292,659 - +0.1 292,661 + +0.5 292,669 - +0.1 292,669 - -0.3 292,781 + -0.0 292,895 - SGL_RS03250 0.15 -0.8 292,923 + SGL_RS03250 0.19 -0.5 293,154 + SGL_RS03250 0.52 +0.3 293,167 - SGL_RS03250 0.54 -0.3 293,227 - SGL_RS03250 0.63 -0.2 293,227 - SGL_RS03250 0.63 -1.2 293,330 - SGL_RS03250 0.78 -0.4 293,412 + SGL_RS03250 0.89 -1.0 293,585 - SGL_RS19555 0.51 -0.3 293,607 - SGL_RS19555 0.64 -1.3 293,698 + -0.4 293,859 + +0.2 293,986 + -0.1 294,065 + SGL_RS03255 0.17 +0.4 294,065 + SGL_RS03255 0.17 -0.4 294,087 - SGL_RS03255 0.19 -0.1 294,123 - SGL_RS03255 0.23 +0.1 294,226 - SGL_RS03255 0.32 -0.3 294,232 + SGL_RS03255 0.33 +1.0 294,245 - SGL_RS03255 0.34 -0.2 294,261 + SGL_RS03255 0.35 +0.0 294,318 + SGL_RS03255 0.41 +0.3 294,577 + SGL_RS03255 0.64 +0.1 294,613 + SGL_RS03255 0.68 -0.1
Or see this region's nucleotide sequence