Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18215

Experiment: control for light_bubbling experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS18210 and SGL_RS18215 are separated by 75 nucleotidesSGL_RS18215 and SGL_RS18220 are separated by 231 nucleotidesSGL_RS18220 and SGL_RS18225 are separated by 38 nucleotides SGL_RS18210: SGL_RS18210 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 3,536,464 to 3,537,630 _RS18210 SGL_RS18215: SGL_RS18215 - pentapeptide repeat-containing protein, at 3,537,706 to 3,538,215 _RS18215 SGL_RS18220: SGL_RS18220 - hypothetical protein, at 3,538,447 to 3,538,803 _RS18220 SGL_RS18225: SGL_RS18225 - cofactor assembly of complex C subunit B, at 3,538,842 to 3,539,387 _RS18225 Position (kb) 3537 3538 3539Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3536.813 kb on - strand, within SGL_RS18210at 3537.734 kb on - strandat 3537.918 kb on - strand, within SGL_RS18215at 3538.064 kb on - strand, within SGL_RS18215at 3538.152 kb on - strand, within SGL_RS18215at 3538.182 kb on + strandat 3538.315 kb on - strandat 3538.329 kb on - strandat 3538.421 kb on - strandat 3539.037 kb on - strand, within SGL_RS18225at 3539.070 kb on + strand, within SGL_RS18225at 3539.124 kb on - strand, within SGL_RS18225at 3539.139 kb on - strand, within SGL_RS18225at 3539.214 kb on + strand, within SGL_RS18225

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Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
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3,536,813 - SGL_RS18210 0.30 -2.3
3,537,734 - -0.9
3,537,918 - SGL_RS18215 0.42 -0.9
3,538,064 - SGL_RS18215 0.70 -0.1
3,538,152 - SGL_RS18215 0.87 -1.3
3,538,182 + -3.9
3,538,315 - +0.0
3,538,329 - -0.1
3,538,421 - +0.3
3,539,037 - SGL_RS18225 0.36 +0.3
3,539,070 + SGL_RS18225 0.42 -0.2
3,539,124 - SGL_RS18225 0.52 +0.4
3,539,139 - SGL_RS18225 0.54 +0.2
3,539,214 + SGL_RS18225 0.68 +0.3

Or see this region's nucleotide sequence