Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16955

Experiment: control for light_bubbling experiments

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS16950 and SGL_RS16955 are separated by 249 nucleotidesSGL_RS16955 and SGL_RS16960 are separated by 129 nucleotidesSGL_RS16960 and SGL_RS16965 are separated by 1 nucleotides SGL_RS16950: SGL_RS16950 - phosphoketolase, at 3,257,692 to 3,259,887 _RS16950 SGL_RS16955: SGL_RS16955 - site-2 protease family protein, at 3,260,137 to 3,261,276 _RS16955 SGL_RS16960: SGL_RS16960 - YggS family pyridoxal phosphate-dependent enzyme, at 3,261,406 to 3,262,062 _RS16960 SGL_RS16965: SGL_RS16965 - type II toxin-antitoxin system VapC family toxin, at 3,262,064 to 3,262,459 _RS16965 Position (kb) 3260 3261 3262Strain fitness (log2 ratio) -3 -2 -1 0 1at 3259.198 kb on + strand, within SGL_RS16950at 3259.470 kb on + strand, within SGL_RS16950at 3259.639 kb on - strand, within SGL_RS16950at 3259.772 kb on + strandat 3259.876 kb on + strandat 3260.042 kb on - strandat 3260.042 kb on - strandat 3260.055 kb on - strandat 3260.167 kb on - strandat 3260.357 kb on + strand, within SGL_RS16955at 3260.487 kb on + strand, within SGL_RS16955at 3260.623 kb on - strand, within SGL_RS16955at 3260.747 kb on - strand, within SGL_RS16955at 3260.754 kb on + strand, within SGL_RS16955at 3260.772 kb on - strand, within SGL_RS16955at 3260.794 kb on - strand, within SGL_RS16955at 3261.021 kb on + strand, within SGL_RS16955at 3261.029 kb on - strand, within SGL_RS16955at 3261.150 kb on - strand, within SGL_RS16955at 3261.255 kb on + strandat 3261.334 kb on - strandat 3261.442 kb on + strandat 3261.445 kb on + strandat 3261.455 kb on + strandat 3261.463 kb on - strandat 3261.495 kb on - strand, within SGL_RS16960at 3261.554 kb on - strand, within SGL_RS16960at 3261.632 kb on - strand, within SGL_RS16960at 3261.632 kb on - strand, within SGL_RS16960at 3261.876 kb on - strand, within SGL_RS16960at 3261.879 kb on + strand, within SGL_RS16960at 3261.977 kb on - strand, within SGL_RS16960at 3261.977 kb on - strand, within SGL_RS16960at 3262.140 kb on + strand, within SGL_RS16965

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
remove
3,259,198 + SGL_RS16950 0.69 -0.3
3,259,470 + SGL_RS16950 0.81 -0.5
3,259,639 - SGL_RS16950 0.89 -0.7
3,259,772 + -0.1
3,259,876 + -0.3
3,260,042 - -0.1
3,260,042 - +0.2
3,260,055 - -0.1
3,260,167 - +0.3
3,260,357 + SGL_RS16955 0.19 -0.2
3,260,487 + SGL_RS16955 0.31 -3.1
3,260,623 - SGL_RS16955 0.43 -0.8
3,260,747 - SGL_RS16955 0.54 -1.4
3,260,754 + SGL_RS16955 0.54 -0.3
3,260,772 - SGL_RS16955 0.56 -0.1
3,260,794 - SGL_RS16955 0.58 -0.0
3,261,021 + SGL_RS16955 0.78 -1.5
3,261,029 - SGL_RS16955 0.78 -0.5
3,261,150 - SGL_RS16955 0.89 -0.7
3,261,255 + -0.1
3,261,334 - -0.7
3,261,442 + -0.1
3,261,445 + -0.4
3,261,455 + -0.2
3,261,463 - -0.3
3,261,495 - SGL_RS16960 0.14 +0.0
3,261,554 - SGL_RS16960 0.23 +0.2
3,261,632 - SGL_RS16960 0.34 +0.3
3,261,632 - SGL_RS16960 0.34 +0.4
3,261,876 - SGL_RS16960 0.72 +0.1
3,261,879 + SGL_RS16960 0.72 -0.2
3,261,977 - SGL_RS16960 0.87 -0.4
3,261,977 - SGL_RS16960 0.87 -0.5
3,262,140 + SGL_RS16965 0.19 -0.0

Or see this region's nucleotide sequence