Experiment: control for light_bubbling experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS16950 and SGL_RS16955 are separated by 249 nucleotides SGL_RS16955 and SGL_RS16960 are separated by 129 nucleotides SGL_RS16960 and SGL_RS16965 are separated by 1 nucleotides
SGL_RS16950: SGL_RS16950 - phosphoketolase, at 3,257,692 to 3,259,887
_RS16950
SGL_RS16955: SGL_RS16955 - site-2 protease family protein, at 3,260,137 to 3,261,276
_RS16955
SGL_RS16960: SGL_RS16960 - YggS family pyridoxal phosphate-dependent enzyme, at 3,261,406 to 3,262,062
_RS16960
SGL_RS16965: SGL_RS16965 - type II toxin-antitoxin system VapC family toxin, at 3,262,064 to 3,262,459
_RS16965
Position (kb)
3260
3261
3262 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3259.198 kb on + strand, within SGL_RS16950 at 3259.470 kb on + strand, within SGL_RS16950 at 3259.639 kb on - strand, within SGL_RS16950 at 3259.772 kb on + strand at 3259.876 kb on + strand at 3260.042 kb on - strand at 3260.042 kb on - strand at 3260.055 kb on - strand at 3260.167 kb on - strand at 3260.357 kb on + strand, within SGL_RS16955 at 3260.487 kb on + strand, within SGL_RS16955 at 3260.623 kb on - strand, within SGL_RS16955 at 3260.747 kb on - strand, within SGL_RS16955 at 3260.754 kb on + strand, within SGL_RS16955 at 3260.772 kb on - strand, within SGL_RS16955 at 3260.794 kb on - strand, within SGL_RS16955 at 3261.021 kb on + strand, within SGL_RS16955 at 3261.029 kb on - strand, within SGL_RS16955 at 3261.150 kb on - strand, within SGL_RS16955 at 3261.255 kb on + strand at 3261.334 kb on - strand at 3261.442 kb on + strand at 3261.445 kb on + strand at 3261.455 kb on + strand at 3261.463 kb on - strand at 3261.495 kb on - strand, within SGL_RS16960 at 3261.554 kb on - strand, within SGL_RS16960 at 3261.632 kb on - strand, within SGL_RS16960 at 3261.632 kb on - strand, within SGL_RS16960 at 3261.876 kb on - strand, within SGL_RS16960 at 3261.879 kb on + strand, within SGL_RS16960 at 3261.977 kb on - strand, within SGL_RS16960 at 3261.977 kb on - strand, within SGL_RS16960 at 3262.140 kb on + strand, within SGL_RS16965
Per-strain Table
Position Strand Gene LocusTag Fraction control for light_bubbling experiments remove 3,259,198 + SGL_RS16950 0.69 -0.3 3,259,470 + SGL_RS16950 0.81 -0.5 3,259,639 - SGL_RS16950 0.89 -0.7 3,259,772 + -0.1 3,259,876 + -0.3 3,260,042 - -0.1 3,260,042 - +0.2 3,260,055 - -0.1 3,260,167 - +0.3 3,260,357 + SGL_RS16955 0.19 -0.2 3,260,487 + SGL_RS16955 0.31 -3.1 3,260,623 - SGL_RS16955 0.43 -0.8 3,260,747 - SGL_RS16955 0.54 -1.4 3,260,754 + SGL_RS16955 0.54 -0.3 3,260,772 - SGL_RS16955 0.56 -0.1 3,260,794 - SGL_RS16955 0.58 -0.0 3,261,021 + SGL_RS16955 0.78 -1.5 3,261,029 - SGL_RS16955 0.78 -0.5 3,261,150 - SGL_RS16955 0.89 -0.7 3,261,255 + -0.1 3,261,334 - -0.7 3,261,442 + -0.1 3,261,445 + -0.4 3,261,455 + -0.2 3,261,463 - -0.3 3,261,495 - SGL_RS16960 0.14 +0.0 3,261,554 - SGL_RS16960 0.23 +0.2 3,261,632 - SGL_RS16960 0.34 +0.3 3,261,632 - SGL_RS16960 0.34 +0.4 3,261,876 - SGL_RS16960 0.72 +0.1 3,261,879 + SGL_RS16960 0.72 -0.2 3,261,977 - SGL_RS16960 0.87 -0.4 3,261,977 - SGL_RS16960 0.87 -0.5 3,262,140 + SGL_RS16965 0.19 -0.0
Or see this region's nucleotide sequence