Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15485

Experiment: control for light_bubbling experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15470 and SGL_RS15475 are separated by 45 nucleotidesSGL_RS15475 and SGL_RS15480 are separated by 137 nucleotidesSGL_RS15480 and SGL_RS15485 overlap by 4 nucleotidesSGL_RS15485 and SGL_RS15490 are separated by 3 nucleotidesSGL_RS15490 and SGL_RS15495 are separated by 211 nucleotides SGL_RS15470: SGL_RS15470 - IS5 family transposase, at 2,921,660 to 2,922,439 _RS15470 SGL_RS15475: SGL_RS15475 - hypothetical protein, at 2,922,485 to 2,922,769 _RS15475 SGL_RS15480: SGL_RS15480 - biopolymer transporter ExbD, at 2,922,907 to 2,923,359 _RS15480 SGL_RS15485: SGL_RS15485 - biopolymer transporter ExbD, at 2,923,356 to 2,923,799 _RS15485 SGL_RS15490: SGL_RS15490 - MotA/TolQ/ExbB proton channel family protein, at 2,923,803 to 2,924,567 _RS15490 SGL_RS15495: SGL_RS15495 - Fe(3+) ABC transporter substrate-binding protein, at 2,924,779 to 2,925,819 _RS15495 Position (kb) 2923 2924Strain fitness (log2 ratio) -2 -1 0 1at 2923.012 kb on - strand, within SGL_RS15480at 2923.129 kb on - strand, within SGL_RS15480at 2923.189 kb on - strand, within SGL_RS15480at 2923.218 kb on - strand, within SGL_RS15480at 2923.295 kb on - strand, within SGL_RS15480at 2923.461 kb on + strand, within SGL_RS15485at 2923.466 kb on + strand, within SGL_RS15485at 2923.656 kb on + strand, within SGL_RS15485at 2923.801 kb on + strandat 2923.801 kb on + strandat 2923.824 kb on - strandat 2923.850 kb on + strandat 2923.858 kb on - strandat 2923.936 kb on - strand, within SGL_RS15490at 2924.237 kb on + strand, within SGL_RS15490at 2924.237 kb on + strand, within SGL_RS15490at 2924.332 kb on + strand, within SGL_RS15490at 2924.397 kb on - strand, within SGL_RS15490at 2924.408 kb on + strand, within SGL_RS15490at 2924.460 kb on - strand, within SGL_RS15490at 2924.488 kb on + strand, within SGL_RS15490at 2924.509 kb on + strandat 2924.517 kb on - strandat 2924.517 kb on - strandat 2924.657 kb on + strandat 2924.665 kb on - strandat 2924.699 kb on + strandat 2924.730 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
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2,923,012 - SGL_RS15480 0.23 -0.3
2,923,129 - SGL_RS15480 0.49 -0.6
2,923,189 - SGL_RS15480 0.62 -0.7
2,923,218 - SGL_RS15480 0.69 -1.1
2,923,295 - SGL_RS15480 0.86 -2.3
2,923,461 + SGL_RS15485 0.24 -1.0
2,923,466 + SGL_RS15485 0.25 -0.5
2,923,656 + SGL_RS15485 0.68 -0.6
2,923,801 + +0.1
2,923,801 + +0.1
2,923,824 - -0.3
2,923,850 + +0.4
2,923,858 - +0.2
2,923,936 - SGL_RS15490 0.17 -0.9
2,924,237 + SGL_RS15490 0.57 -0.7
2,924,237 + SGL_RS15490 0.57 -2.1
2,924,332 + SGL_RS15490 0.69 -0.3
2,924,397 - SGL_RS15490 0.78 -1.3
2,924,408 + SGL_RS15490 0.79 -1.1
2,924,460 - SGL_RS15490 0.86 +0.1
2,924,488 + SGL_RS15490 0.90 -0.5
2,924,509 + +0.1
2,924,517 - -0.8
2,924,517 - -0.4
2,924,657 + -1.0
2,924,665 - -0.3
2,924,699 + -0.7
2,924,730 - -0.0

Or see this region's nucleotide sequence