Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14585

Experiment: control for light_bubbling experiments

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS14575 and SGL_RS14580 are separated by 222 nucleotidesSGL_RS14580 and SGL_RS14585 are separated by 55 nucleotidesSGL_RS14585 and SGL_RS14590 are separated by 56 nucleotidesSGL_RS14590 and SGL_RS14595 overlap by 13 nucleotides SGL_RS14575: SGL_RS14575 - RNA-binding protein, at 2,724,648 to 2,725,103 _RS14575 SGL_RS14580: SGL_RS14580 - ribose-5-phosphate isomerase RpiA, at 2,725,326 to 2,726,033 _RS14580 SGL_RS14585: SGL_RS14585 - TolB family protein, at 2,726,089 to 2,726,640 _RS14585 SGL_RS14590: SGL_RS14590 - hypothetical protein, at 2,726,697 to 2,727,059 _RS14590 SGL_RS14595: SGL_RS14595 - phospholipase D-like domain-containing protein, at 2,727,047 to 2,728,708 _RS14595 Position (kb) 2726 2727Strain fitness (log2 ratio) -3 -2 -1 0 1at 2725.129 kb on - strandat 2725.529 kb on - strand, within SGL_RS14580at 2725.652 kb on - strand, within SGL_RS14580at 2726.060 kb on - strandat 2726.241 kb on - strand, within SGL_RS14585at 2726.383 kb on - strand, within SGL_RS14585at 2726.837 kb on - strand, within SGL_RS14590at 2726.959 kb on + strand, within SGL_RS14590at 2727.098 kb on + strandat 2727.106 kb on - strandat 2727.151 kb on + strandat 2727.156 kb on + strandat 2727.175 kb on - strandat 2727.184 kb on + strandat 2727.192 kb on - strandat 2727.374 kb on + strand, within SGL_RS14595at 2727.457 kb on - strand, within SGL_RS14595at 2727.484 kb on + strand, within SGL_RS14595at 2727.497 kb on + strand, within SGL_RS14595at 2727.549 kb on + strand, within SGL_RS14595at 2727.588 kb on + strand, within SGL_RS14595at 2727.640 kb on - strand, within SGL_RS14595

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
remove
2,725,129 - -0.4
2,725,529 - SGL_RS14580 0.29 -3.6
2,725,652 - SGL_RS14580 0.46 -1.9
2,726,060 - +0.1
2,726,241 - SGL_RS14585 0.28 -1.5
2,726,383 - SGL_RS14585 0.53 -0.4
2,726,837 - SGL_RS14590 0.39 +0.0
2,726,959 + SGL_RS14590 0.72 -0.1
2,727,098 + +0.1
2,727,106 - +0.0
2,727,151 + -0.5
2,727,156 + -0.4
2,727,175 - +0.0
2,727,184 + +0.4
2,727,192 - -0.3
2,727,374 + SGL_RS14595 0.20 +0.5
2,727,457 - SGL_RS14595 0.25 -0.3
2,727,484 + SGL_RS14595 0.26 -0.3
2,727,497 + SGL_RS14595 0.27 -0.4
2,727,549 + SGL_RS14595 0.30 +0.5
2,727,588 + SGL_RS14595 0.33 +0.5
2,727,640 - SGL_RS14595 0.36 +0.1

Or see this region's nucleotide sequence