Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14225

Experiment: control for light_bubbling experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14210 and SGL_RS14215 are separated by 53 nucleotidesSGL_RS14215 and SGL_RS14220 are separated by 99 nucleotidesSGL_RS14220 and SGL_RS14225 are separated by 173 nucleotidesSGL_RS14225 and SGL_RS14230 are separated by 226 nucleotidesSGL_RS14230 and SGL_RS14235 are separated by 100 nucleotides SGL_RS14210: SGL_RS14210 - pentapeptide repeat-containing protein, at 2,643,403 to 2,644,569 _RS14210 SGL_RS14215: SGL_RS14215 - tRNA-Arg, at 2,644,623 to 2,644,695 _RS14215 SGL_RS14220: SGL_RS14220 - 30S ribosomal protein S14, at 2,644,795 to 2,645,097 _RS14220 SGL_RS14225: SGL_RS14225 - PspA/IM30 family protein, at 2,645,271 to 2,646,074 _RS14225 SGL_RS14230: SGL_RS14230 - hypothetical protein, at 2,646,301 to 2,646,522 _RS14230 SGL_RS14235: SGL_RS14235 - MBL fold metallo-hydrolase, at 2,646,623 to 2,647,282 _RS14235 Position (kb) 2645 2646 2647Strain fitness (log2 ratio) -1 0 1at 2644.303 kb on + strand, within SGL_RS14210at 2644.539 kb on - strandat 2644.634 kb on + strand, within SGL_RS14215at 2644.746 kb on - strandat 2645.142 kb on + strandat 2645.419 kb on - strand, within SGL_RS14225at 2646.186 kb on - strandat 2646.187 kb on - strandat 2646.211 kb on - strandat 2646.211 kb on - strandat 2646.238 kb on + strandat 2646.329 kb on + strand, within SGL_RS14230at 2646.376 kb on + strand, within SGL_RS14230at 2646.534 kb on - strandat 2646.685 kb on + strandat 2646.689 kb on + strand, within SGL_RS14235at 2646.694 kb on + strand, within SGL_RS14235at 2646.698 kb on - strand, within SGL_RS14235at 2646.730 kb on - strand, within SGL_RS14235at 2646.764 kb on - strand, within SGL_RS14235at 2646.910 kb on - strand, within SGL_RS14235at 2646.919 kb on + strand, within SGL_RS14235at 2646.975 kb on - strand, within SGL_RS14235at 2646.979 kb on + strand, within SGL_RS14235

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Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
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2,644,303 + SGL_RS14210 0.77 -0.1
2,644,539 - -0.1
2,644,634 + SGL_RS14215 0.15 -1.0
2,644,746 - -0.2
2,645,142 + -0.0
2,645,419 - SGL_RS14225 0.18 -1.0
2,646,186 - -0.8
2,646,187 - +0.2
2,646,211 - -0.9
2,646,211 - -0.0
2,646,238 + -0.4
2,646,329 + SGL_RS14230 0.13 +0.1
2,646,376 + SGL_RS14230 0.34 +0.3
2,646,534 - +0.1
2,646,685 + +0.0
2,646,689 + SGL_RS14235 0.10 -0.3
2,646,694 + SGL_RS14235 0.11 -0.1
2,646,698 - SGL_RS14235 0.11 +0.1
2,646,730 - SGL_RS14235 0.16 +0.3
2,646,764 - SGL_RS14235 0.21 +0.3
2,646,910 - SGL_RS14235 0.43 +0.0
2,646,919 + SGL_RS14235 0.45 -0.6
2,646,975 - SGL_RS14235 0.53 +0.6
2,646,979 + SGL_RS14235 0.54 -0.3

Or see this region's nucleotide sequence