Experiment: control for light_bubbling experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS14210 and SGL_RS14215 are separated by 53 nucleotides SGL_RS14215 and SGL_RS14220 are separated by 99 nucleotides SGL_RS14220 and SGL_RS14225 are separated by 173 nucleotides SGL_RS14225 and SGL_RS14230 are separated by 226 nucleotides SGL_RS14230 and SGL_RS14235 are separated by 100 nucleotides
SGL_RS14210: SGL_RS14210 - pentapeptide repeat-containing protein, at 2,643,403 to 2,644,569
_RS14210
SGL_RS14215: SGL_RS14215 - tRNA-Arg, at 2,644,623 to 2,644,695
_RS14215
SGL_RS14220: SGL_RS14220 - 30S ribosomal protein S14, at 2,644,795 to 2,645,097
_RS14220
SGL_RS14225: SGL_RS14225 - PspA/IM30 family protein, at 2,645,271 to 2,646,074
_RS14225
SGL_RS14230: SGL_RS14230 - hypothetical protein, at 2,646,301 to 2,646,522
_RS14230
SGL_RS14235: SGL_RS14235 - MBL fold metallo-hydrolase, at 2,646,623 to 2,647,282
_RS14235
Position (kb)
2645
2646
2647 Strain fitness (log2 ratio)
-1
0
1 at 2644.303 kb on + strand, within SGL_RS14210 at 2644.539 kb on - strand at 2644.634 kb on + strand, within SGL_RS14215 at 2644.746 kb on - strand at 2645.142 kb on + strand at 2645.419 kb on - strand, within SGL_RS14225 at 2646.186 kb on - strand at 2646.187 kb on - strand at 2646.211 kb on - strand at 2646.211 kb on - strand at 2646.238 kb on + strand at 2646.329 kb on + strand, within SGL_RS14230 at 2646.376 kb on + strand, within SGL_RS14230 at 2646.534 kb on - strand at 2646.685 kb on + strand at 2646.689 kb on + strand, within SGL_RS14235 at 2646.694 kb on + strand, within SGL_RS14235 at 2646.698 kb on - strand, within SGL_RS14235 at 2646.730 kb on - strand, within SGL_RS14235 at 2646.764 kb on - strand, within SGL_RS14235 at 2646.910 kb on - strand, within SGL_RS14235 at 2646.919 kb on + strand, within SGL_RS14235 at 2646.975 kb on - strand, within SGL_RS14235 at 2646.979 kb on + strand, within SGL_RS14235
Per-strain Table
Position Strand Gene LocusTag Fraction control for light_bubbling experiments remove 2,644,303 + SGL_RS14210 0.77 -0.1 2,644,539 - -0.1 2,644,634 + SGL_RS14215 0.15 -1.0 2,644,746 - -0.2 2,645,142 + -0.0 2,645,419 - SGL_RS14225 0.18 -1.0 2,646,186 - -0.8 2,646,187 - +0.2 2,646,211 - -0.9 2,646,211 - -0.0 2,646,238 + -0.4 2,646,329 + SGL_RS14230 0.13 +0.1 2,646,376 + SGL_RS14230 0.34 +0.3 2,646,534 - +0.1 2,646,685 + +0.0 2,646,689 + SGL_RS14235 0.10 -0.3 2,646,694 + SGL_RS14235 0.11 -0.1 2,646,698 - SGL_RS14235 0.11 +0.1 2,646,730 - SGL_RS14235 0.16 +0.3 2,646,764 - SGL_RS14235 0.21 +0.3 2,646,910 - SGL_RS14235 0.43 +0.0 2,646,919 + SGL_RS14235 0.45 -0.6 2,646,975 - SGL_RS14235 0.53 +0.6 2,646,979 + SGL_RS14235 0.54 -0.3
Or see this region's nucleotide sequence