Experiment: control for light_bubbling experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS13860 and SGL_RS13865 are separated by 229 nucleotides SGL_RS13865 and SGL_RS13870 are separated by 4 nucleotides SGL_RS13870 and SGL_RS13875 are separated by 64 nucleotides SGL_RS13875 and SGL_RS13880 are separated by 36 nucleotides
SGL_RS13860: SGL_RS13860 - acetolactate synthase small subunit, at 2,575,344 to 2,575,862
_RS13860
SGL_RS13865: SGL_RS13865 - DUF3285 domain-containing protein, at 2,576,092 to 2,576,280
_RS13865
SGL_RS13870: SGL_RS13870 - rRNA maturation RNase YbeY, at 2,576,285 to 2,576,824
_RS13870
SGL_RS13875: SGL_RS13875 - diacylglycerol kinase, at 2,576,889 to 2,577,416
_RS13875
SGL_RS13880: SGL_RS13880 - aminodeoxychorismate/anthranilate synthase component II, at 2,577,453 to 2,578,043
_RS13880
Position (kb)
2576
2577 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2575.604 kb on + strand, within SGL_RS13860 at 2576.003 kb on - strand at 2576.178 kb on + strand, within SGL_RS13865 at 2576.180 kb on + strand, within SGL_RS13865 at 2576.186 kb on - strand, within SGL_RS13865 at 2576.188 kb on - strand, within SGL_RS13865 at 2576.336 kb on + strand at 2576.369 kb on - strand, within SGL_RS13870 at 2576.423 kb on - strand, within SGL_RS13870 at 2576.425 kb on - strand, within SGL_RS13870 at 2576.532 kb on - strand, within SGL_RS13870 at 2576.532 kb on - strand, within SGL_RS13870 at 2576.631 kb on + strand, within SGL_RS13870 at 2576.687 kb on + strand, within SGL_RS13870 at 2576.716 kb on - strand, within SGL_RS13870 at 2576.885 kb on - strand at 2577.411 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction control for light_bubbling experiments remove 2,575,604 + SGL_RS13860 0.50 -1.4 2,576,003 - -1.7 2,576,178 + SGL_RS13865 0.46 +0.5 2,576,180 + SGL_RS13865 0.47 +0.3 2,576,186 - SGL_RS13865 0.50 +0.4 2,576,188 - SGL_RS13865 0.51 +0.3 2,576,336 + -3.0 2,576,369 - SGL_RS13870 0.16 -1.9 2,576,423 - SGL_RS13870 0.26 -2.0 2,576,425 - SGL_RS13870 0.26 -1.9 2,576,532 - SGL_RS13870 0.46 -3.6 2,576,532 - SGL_RS13870 0.46 -2.6 2,576,631 + SGL_RS13870 0.64 -2.5 2,576,687 + SGL_RS13870 0.74 -3.6 2,576,716 - SGL_RS13870 0.80 -2.6 2,576,885 - -2.8 2,577,411 + +0.4
Or see this region's nucleotide sequence