Experiment: control for light_bubbling experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS12615 and SGL_RS12620 are separated by 266 nucleotides SGL_RS12620 and SGL_RS12625 are separated by 368 nucleotides SGL_RS12625 and SGL_RS12630 are separated by 178 nucleotides SGL_RS12630 and SGL_RS12635 are separated by 64 nucleotides
SGL_RS12615: SGL_RS12615 - helix-turn-helix transcriptional regulator, at 2,286,798 to 2,287,067
_RS12615
SGL_RS12620: SGL_RS12620 - photosystem I iron-sulfur center protein PsaC, at 2,287,334 to 2,287,579
_RS12620
SGL_RS12625: SGL_RS12625 - NAD(P)H-quinone oxidoreductase subunit 4, at 2,287,948 to 2,289,525
_RS12625
SGL_RS12630: SGL_RS12630 - SH3 domain-containing protein, at 2,289,704 to 2,290,024
_RS12630
SGL_RS12635: SGL_RS12635 - hypothetical protein, at 2,290,089 to 2,290,421
_RS12635
Position (kb)
2287
2288
2289
2290 Strain fitness (log2 ratio)
-2
-1
0
1 at 2286.974 kb on + strand, within SGL_RS12615 at 2286.997 kb on - strand, within SGL_RS12615 at 2288.100 kb on + strand at 2288.116 kb on - strand, within SGL_RS12625 at 2288.200 kb on - strand, within SGL_RS12625 at 2288.307 kb on + strand, within SGL_RS12625 at 2288.562 kb on + strand, within SGL_RS12625 at 2288.826 kb on - strand, within SGL_RS12625 at 2289.011 kb on + strand, within SGL_RS12625 at 2289.435 kb on - strand at 2289.474 kb on + strand at 2289.483 kb on - strand at 2289.873 kb on - strand, within SGL_RS12630 at 2289.901 kb on - strand, within SGL_RS12630 at 2289.964 kb on + strand, within SGL_RS12630 at 2290.121 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction control for light_bubbling experiments remove 2,286,974 + SGL_RS12615 0.65 -0.5 2,286,997 - SGL_RS12615 0.74 -0.2 2,288,100 + -2.0 2,288,116 - SGL_RS12625 0.11 -1.6 2,288,200 - SGL_RS12625 0.16 -0.6 2,288,307 + SGL_RS12625 0.23 -0.4 2,288,562 + SGL_RS12625 0.39 -0.7 2,288,826 - SGL_RS12625 0.56 -0.3 2,289,011 + SGL_RS12625 0.67 -0.4 2,289,435 - -0.2 2,289,474 + -0.8 2,289,483 - -0.1 2,289,873 - SGL_RS12630 0.53 -0.4 2,289,901 - SGL_RS12630 0.61 +0.2 2,289,964 + SGL_RS12630 0.81 +0.7 2,290,121 + -0.0
Or see this region's nucleotide sequence