Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12625

Experiment: control for light_bubbling experiments

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS12615 and SGL_RS12620 are separated by 266 nucleotidesSGL_RS12620 and SGL_RS12625 are separated by 368 nucleotidesSGL_RS12625 and SGL_RS12630 are separated by 178 nucleotidesSGL_RS12630 and SGL_RS12635 are separated by 64 nucleotides SGL_RS12615: SGL_RS12615 - helix-turn-helix transcriptional regulator, at 2,286,798 to 2,287,067 _RS12615 SGL_RS12620: SGL_RS12620 - photosystem I iron-sulfur center protein PsaC, at 2,287,334 to 2,287,579 _RS12620 SGL_RS12625: SGL_RS12625 - NAD(P)H-quinone oxidoreductase subunit 4, at 2,287,948 to 2,289,525 _RS12625 SGL_RS12630: SGL_RS12630 - SH3 domain-containing protein, at 2,289,704 to 2,290,024 _RS12630 SGL_RS12635: SGL_RS12635 - hypothetical protein, at 2,290,089 to 2,290,421 _RS12635 Position (kb) 2287 2288 2289 2290Strain fitness (log2 ratio) -2 -1 0 1at 2286.974 kb on + strand, within SGL_RS12615at 2286.997 kb on - strand, within SGL_RS12615at 2288.100 kb on + strandat 2288.116 kb on - strand, within SGL_RS12625at 2288.200 kb on - strand, within SGL_RS12625at 2288.307 kb on + strand, within SGL_RS12625at 2288.562 kb on + strand, within SGL_RS12625at 2288.826 kb on - strand, within SGL_RS12625at 2289.011 kb on + strand, within SGL_RS12625at 2289.435 kb on - strandat 2289.474 kb on + strandat 2289.483 kb on - strandat 2289.873 kb on - strand, within SGL_RS12630at 2289.901 kb on - strand, within SGL_RS12630at 2289.964 kb on + strand, within SGL_RS12630at 2290.121 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
remove
2,286,974 + SGL_RS12615 0.65 -0.5
2,286,997 - SGL_RS12615 0.74 -0.2
2,288,100 + -2.0
2,288,116 - SGL_RS12625 0.11 -1.6
2,288,200 - SGL_RS12625 0.16 -0.6
2,288,307 + SGL_RS12625 0.23 -0.4
2,288,562 + SGL_RS12625 0.39 -0.7
2,288,826 - SGL_RS12625 0.56 -0.3
2,289,011 + SGL_RS12625 0.67 -0.4
2,289,435 - -0.2
2,289,474 + -0.8
2,289,483 - -0.1
2,289,873 - SGL_RS12630 0.53 -0.4
2,289,901 - SGL_RS12630 0.61 +0.2
2,289,964 + SGL_RS12630 0.81 +0.7
2,290,121 + -0.0

Or see this region's nucleotide sequence