Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11985

Experiment: control for light_bubbling experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11980 and SGL_RS11985 are separated by 268 nucleotidesSGL_RS11985 and SGL_RS11990 are separated by 19 nucleotides SGL_RS11980: SGL_RS11980 - phosphoglycerate kinase, at 2,139,193 to 2,140,395 _RS11980 SGL_RS11985: SGL_RS11985 - LysR family transcriptional regulator, at 2,140,664 to 2,141,593 _RS11985 SGL_RS11990: SGL_RS11990 - alanine--tRNA ligase, at 2,141,613 to 2,144,246 _RS11990 Position (kb) 2140 2141 2142Strain fitness (log2 ratio) -1 0 1at 2139.900 kb on - strand, within SGL_RS11980at 2140.612 kb on + strandat 2140.620 kb on - strandat 2141.044 kb on - strand, within SGL_RS11985

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Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
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2,139,900 - SGL_RS11980 0.59 -1.5
2,140,612 + -0.2
2,140,620 - -0.5
2,141,044 - SGL_RS11985 0.41 -1.1

Or see this region's nucleotide sequence