Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11970

Experiment: control for light_bubbling experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11955 and SGL_RS11960 are separated by 105 nucleotidesSGL_RS11960 and SGL_RS11965 overlap by 32 nucleotidesSGL_RS11965 and SGL_RS11970 overlap by 8 nucleotidesSGL_RS11970 and SGL_RS18940 are separated by 56 nucleotidesSGL_RS18940 and SGL_RS11975 are separated by 101 nucleotidesSGL_RS11975 and SGL_RS11980 are separated by 50 nucleotides SGL_RS11955: SGL_RS11955 - aminomethyl-transferring glycine dehydrogenase, at 2,134,202 to 2,137,153 _RS11955 SGL_RS11960: SGL_RS11960 - hypothetical protein, at 2,137,259 to 2,137,738 _RS11960 SGL_RS11965: SGL_RS11965 - hypothetical protein, at 2,137,707 to 2,138,081 _RS11965 SGL_RS11970: SGL_RS11970 - HNH endonuclease, at 2,138,074 to 2,138,439 _RS11970 SGL_RS18940: SGL_RS18940 - DUF433 domain-containing protein, at 2,138,496 to 2,138,621 _RS18940 SGL_RS11975: SGL_RS11975 - DUF2358 domain-containing protein, at 2,138,723 to 2,139,142 _RS11975 SGL_RS11980: SGL_RS11980 - phosphoglycerate kinase, at 2,139,193 to 2,140,395 _RS11980 Position (kb) 2138 2139Strain fitness (log2 ratio) -1 0 1at 2137.119 kb on + strandat 2137.292 kb on + strandat 2137.417 kb on + strand, within SGL_RS11960at 2137.499 kb on - strand, within SGL_RS11960at 2137.676 kb on + strand, within SGL_RS11960at 2138.222 kb on + strand, within SGL_RS11970at 2138.765 kb on + strand, within SGL_RS11975at 2138.865 kb on - strand, within SGL_RS11975at 2138.923 kb on + strand, within SGL_RS11975

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Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
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2,137,119 + -0.1
2,137,292 + -0.1
2,137,417 + SGL_RS11960 0.33 +0.1
2,137,499 - SGL_RS11960 0.50 +1.0
2,137,676 + SGL_RS11960 0.87 +0.5
2,138,222 + SGL_RS11970 0.40 -1.0
2,138,765 + SGL_RS11975 0.10 +0.2
2,138,865 - SGL_RS11975 0.34 -0.1
2,138,923 + SGL_RS11975 0.48 -0.3

Or see this region's nucleotide sequence