Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11675

Experiment: control for light_bubbling experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11660 and SGL_RS11665 are separated by 90 nucleotidesSGL_RS11665 and SGL_RS11670 overlap by 4 nucleotidesSGL_RS11670 and SGL_RS11675 are separated by 166 nucleotidesSGL_RS11675 and SGL_RS11680 overlap by 4 nucleotidesSGL_RS11680 and SGL_RS11685 are separated by 39 nucleotides SGL_RS11660: SGL_RS11660 - carotenoid oxygenase family protein, at 2,073,161 to 2,074,603 _RS11660 SGL_RS11665: SGL_RS11665 - type II toxin-antitoxin system Phd/YefM family antitoxin, at 2,074,694 to 2,074,957 _RS11665 SGL_RS11670: SGL_RS11670 - Txe/YoeB family addiction module toxin, at 2,074,954 to 2,075,214 _RS11670 SGL_RS11675: SGL_RS11675 - chromophore lyase CpcT/CpeT, at 2,075,381 to 2,075,971 _RS11675 SGL_RS11680: SGL_RS11680 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 2,075,968 to 2,076,507 _RS11680 SGL_RS11685: SGL_RS11685 - diflavin flavoprotein, at 2,076,547 to 2,078,340 _RS11685 Position (kb) 2075 2076Strain fitness (log2 ratio) -1 0 1at 2074.476 kb on - strandat 2075.585 kb on - strand, within SGL_RS11675at 2075.592 kb on + strand, within SGL_RS11675at 2075.791 kb on - strand, within SGL_RS11675at 2075.832 kb on + strand, within SGL_RS11675at 2076.057 kb on - strand, within SGL_RS11680at 2076.632 kb on + strandat 2076.883 kb on + strand, within SGL_RS11685at 2076.940 kb on + strand, within SGL_RS11685

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Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
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2,074,476 - -0.0
2,075,585 - SGL_RS11675 0.35 -1.6
2,075,592 + SGL_RS11675 0.36 -0.7
2,075,791 - SGL_RS11675 0.69 -1.4
2,075,832 + SGL_RS11675 0.76 -1.4
2,076,057 - SGL_RS11680 0.16 -1.2
2,076,632 + -0.0
2,076,883 + SGL_RS11685 0.19 -0.5
2,076,940 + SGL_RS11685 0.22 +0.6

Or see this region's nucleotide sequence