Experiment: control for light_bubbling experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS11485 and SGL_RS11490 are separated by 263 nucleotides SGL_RS11490 and SGL_RS11495 are separated by 41 nucleotides SGL_RS11495 and SGL_RS11500 are separated by 60 nucleotides
SGL_RS11485: SGL_RS11485 - inorganic diphosphatase, at 2,034,294 to 2,034,803
_RS11485
SGL_RS11490: SGL_RS11490 - NAD(P)H-quinone oxidoreductase subunit M, at 2,035,067 to 2,035,432
_RS11490
SGL_RS11495: SGL_RS11495 - Ig-like domain-containing protein, at 2,035,474 to 2,036,850
_RS11495
SGL_RS11500: SGL_RS11500 - glycoside hydrolase family 3 N-terminal domain-containing protein, at 2,036,911 to 2,038,527
_RS11500
Position (kb)
2035
2036
2037 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2034.772 kb on + strand at 2034.819 kb on + strand at 2034.905 kb on - strand at 2035.464 kb on + strand at 2035.464 kb on + strand at 2035.472 kb on - strand at 2035.472 kb on - strand at 2035.472 kb on - strand at 2035.474 kb on + strand at 2035.530 kb on + strand at 2035.538 kb on - strand at 2035.543 kb on - strand at 2035.547 kb on + strand at 2035.687 kb on + strand, within SGL_RS11495 at 2035.708 kb on - strand, within SGL_RS11495 at 2035.884 kb on - strand, within SGL_RS11495 at 2036.052 kb on + strand, within SGL_RS11495 at 2036.619 kb on + strand, within SGL_RS11495 at 2036.671 kb on - strand, within SGL_RS11495 at 2036.767 kb on - strand at 2036.804 kb on + strand at 2036.804 kb on + strand at 2037.138 kb on + strand, within SGL_RS11500 at 2037.266 kb on + strand, within SGL_RS11500 at 2037.283 kb on - strand, within SGL_RS11500 at 2037.297 kb on - strand, within SGL_RS11500 at 2037.483 kb on - strand, within SGL_RS11500 at 2037.596 kb on + strand, within SGL_RS11500 at 2037.829 kb on + strand, within SGL_RS11500
Per-strain Table
Position Strand Gene LocusTag Fraction control for light_bubbling experiments remove 2,034,772 + -0.2 2,034,819 + +0.2 2,034,905 - -0.2 2,035,464 + -1.2 2,035,464 + -4.3 2,035,472 - -2.7 2,035,472 - -2.0 2,035,472 - -1.9 2,035,474 + -3.4 2,035,530 + -2.4 2,035,538 - -1.4 2,035,543 - -3.4 2,035,547 + -3.3 2,035,687 + SGL_RS11495 0.15 -1.5 2,035,708 - SGL_RS11495 0.17 -2.5 2,035,884 - SGL_RS11495 0.30 -2.9 2,036,052 + SGL_RS11495 0.42 -3.3 2,036,619 + SGL_RS11495 0.83 -0.0 2,036,671 - SGL_RS11495 0.87 -0.0 2,036,767 - +0.4 2,036,804 + +0.3 2,036,804 + +0.0 2,037,138 + SGL_RS11500 0.14 -0.1 2,037,266 + SGL_RS11500 0.22 +0.1 2,037,283 - SGL_RS11500 0.23 +0.2 2,037,297 - SGL_RS11500 0.24 -0.1 2,037,483 - SGL_RS11500 0.35 +0.7 2,037,596 + SGL_RS11500 0.42 -0.1 2,037,829 + SGL_RS11500 0.57 +0.4
Or see this region's nucleotide sequence