Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09160

Experiment: control for light_bubbling experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09150 and SGL_RS09155 are separated by 308 nucleotidesSGL_RS09155 and SGL_RS09160 are separated by 441 nucleotidesSGL_RS09160 and SGL_RS09165 are separated by 110 nucleotidesSGL_RS09165 and SGL_RS09170 are separated by 236 nucleotides SGL_RS09150: SGL_RS09150 - acetolactate synthase large subunit, at 1,556,475 to 1,558,118 _RS09150 SGL_RS09155: SGL_RS09155 - riboflavin synthase subunit alpha, at 1,558,427 to 1,558,627 _RS09155 SGL_RS09160: SGL_RS09160 - thioredoxin family protein, at 1,559,069 to 1,559,611 _RS09160 SGL_RS09165: SGL_RS09165 - hypothetical protein, at 1,559,722 to 1,560,150 _RS09165 SGL_RS09170: SGL_RS09170 - class II fructose-bisphosphatase, at 1,560,387 to 1,561,424 _RS09170 Position (kb) 1559 1560Strain fitness (log2 ratio) -2 -1 0 1at 1558.222 kb on + strandat 1558.266 kb on + strandat 1558.274 kb on - strandat 1558.669 kb on + strandat 1558.937 kb on - strandat 1559.104 kb on + strandat 1559.123 kb on - strandat 1559.170 kb on + strand, within SGL_RS09160at 1559.393 kb on + strand, within SGL_RS09160at 1559.776 kb on - strand, within SGL_RS09165at 1559.907 kb on - strand, within SGL_RS09165at 1559.947 kb on + strand, within SGL_RS09165at 1559.955 kb on - strand, within SGL_RS09165at 1560.019 kb on - strand, within SGL_RS09165at 1560.050 kb on + strand, within SGL_RS09165at 1560.058 kb on - strand, within SGL_RS09165at 1560.123 kb on + strandat 1560.230 kb on - strandat 1560.292 kb on + strandat 1560.293 kb on - strandat 1560.293 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
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1,558,222 + -0.0
1,558,266 + -0.1
1,558,274 - -0.1
1,558,669 + -0.8
1,558,937 - -0.1
1,559,104 + -0.2
1,559,123 - +0.4
1,559,170 + SGL_RS09160 0.19 -1.6
1,559,393 + SGL_RS09160 0.60 -1.9
1,559,776 - SGL_RS09165 0.13 -0.1
1,559,907 - SGL_RS09165 0.43 +0.1
1,559,947 + SGL_RS09165 0.52 -0.1
1,559,955 - SGL_RS09165 0.54 -0.1
1,560,019 - SGL_RS09165 0.69 +0.4
1,560,050 + SGL_RS09165 0.76 +0.3
1,560,058 - SGL_RS09165 0.78 +0.6
1,560,123 + +0.1
1,560,230 - -0.1
1,560,292 + -0.1
1,560,293 - -0.2
1,560,293 - -0.0

Or see this region's nucleotide sequence