Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08950

Experiment: control for light_bubbling experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08945 and SGL_RS08950 are separated by 12 nucleotidesSGL_RS08950 and SGL_RS08955 are separated by 66 nucleotides SGL_RS08945: SGL_RS08945 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 1,514,130 to 1,515,338 _RS08945 SGL_RS08950: SGL_RS08950 - DUF2555 domain-containing protein, at 1,515,351 to 1,515,602 _RS08950 SGL_RS08955: SGL_RS08955 - alpha/beta hydrolase, at 1,515,669 to 1,516,424 _RS08955 Position (kb) 1515 1516Strain fitness (log2 ratio) -2 -1 0 1 2at 1515.396 kb on - strand, within SGL_RS08950at 1515.421 kb on - strand, within SGL_RS08950at 1515.564 kb on + strand, within SGL_RS08950at 1515.611 kb on + strandat 1515.639 kb on - strandat 1515.651 kb on + strandat 1515.659 kb on - strandat 1515.669 kb on - strandat 1515.795 kb on - strand, within SGL_RS08955at 1515.896 kb on - strand, within SGL_RS08955at 1516.109 kb on + strand, within SGL_RS08955at 1516.116 kb on - strand, within SGL_RS08955at 1516.125 kb on + strand, within SGL_RS08955at 1516.280 kb on - strand, within SGL_RS08955

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Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
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1,515,396 - SGL_RS08950 0.18 -0.6
1,515,421 - SGL_RS08950 0.28 -0.7
1,515,564 + SGL_RS08950 0.85 -2.6
1,515,611 + +0.0
1,515,639 - +0.1
1,515,651 + -0.1
1,515,659 - +0.2
1,515,669 - -0.3
1,515,795 - SGL_RS08955 0.17 -0.1
1,515,896 - SGL_RS08955 0.30 -0.1
1,516,109 + SGL_RS08955 0.58 -0.0
1,516,116 - SGL_RS08955 0.59 +2.3
1,516,125 + SGL_RS08955 0.60 -0.2
1,516,280 - SGL_RS08955 0.81 -0.2

Or see this region's nucleotide sequence