Experiment: control for light_bubbling experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS08600 and SGL_RS08605 are separated by 260 nucleotides SGL_RS08605 and SGL_RS08610 are separated by 21 nucleotides
SGL_RS08600: SGL_RS08600 - phosphoglycerate dehydrogenase, at 1,432,976 to 1,434,640
_RS08600
SGL_RS08605: SGL_RS08605 - DUF3120 domain-containing protein, at 1,434,901 to 1,435,623
_RS08605
SGL_RS08610: SGL_RS08610 - adenylate/guanylate cyclase domain-containing protein, at 1,435,645 to 1,436,658
_RS08610
Position (kb)
1434
1435
1436 Strain fitness (log2 ratio)
-2
-1
0
1 at 1434.722 kb on + strand at 1434.722 kb on + strand at 1434.745 kb on - strand at 1434.745 kb on - strand at 1434.890 kb on - strand at 1434.971 kb on - strand at 1435.146 kb on + strand, within SGL_RS08605 at 1435.245 kb on - strand, within SGL_RS08605 at 1435.257 kb on + strand, within SGL_RS08605 at 1435.264 kb on + strand, within SGL_RS08605 at 1435.333 kb on - strand, within SGL_RS08605 at 1435.444 kb on - strand, within SGL_RS08605 at 1435.497 kb on - strand, within SGL_RS08605 at 1435.808 kb on + strand, within SGL_RS08610 at 1435.941 kb on + strand, within SGL_RS08610 at 1435.949 kb on - strand, within SGL_RS08610 at 1436.072 kb on - strand, within SGL_RS08610 at 1436.077 kb on + strand, within SGL_RS08610 at 1436.085 kb on - strand, within SGL_RS08610 at 1436.146 kb on - strand, within SGL_RS08610 at 1436.305 kb on + strand, within SGL_RS08610 at 1436.384 kb on + strand, within SGL_RS08610 at 1436.502 kb on - strand, within SGL_RS08610 at 1436.550 kb on + strand, within SGL_RS08610 at 1436.558 kb on - strand at 1436.601 kb on - strand at 1436.619 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction control for light_bubbling experiments remove 1,434,722 + +0.0 1,434,722 + +0.3 1,434,745 - -0.8 1,434,745 - -0.8 1,434,890 - -0.5 1,434,971 - -0.1 1,435,146 + SGL_RS08605 0.34 -0.6 1,435,245 - SGL_RS08605 0.48 -2.6 1,435,257 + SGL_RS08605 0.49 -1.6 1,435,264 + SGL_RS08605 0.50 -2.6 1,435,333 - SGL_RS08605 0.60 -0.8 1,435,444 - SGL_RS08605 0.75 -0.9 1,435,497 - SGL_RS08605 0.82 -1.3 1,435,808 + SGL_RS08610 0.16 +1.0 1,435,941 + SGL_RS08610 0.29 +0.0 1,435,949 - SGL_RS08610 0.30 +0.0 1,436,072 - SGL_RS08610 0.42 -0.5 1,436,077 + SGL_RS08610 0.43 +0.2 1,436,085 - SGL_RS08610 0.43 -0.6 1,436,146 - SGL_RS08610 0.49 -0.2 1,436,305 + SGL_RS08610 0.65 -0.4 1,436,384 + SGL_RS08610 0.73 -0.9 1,436,502 - SGL_RS08610 0.85 -0.0 1,436,550 + SGL_RS08610 0.89 -0.4 1,436,558 - -0.1 1,436,601 - +0.4 1,436,619 - -0.5
Or see this region's nucleotide sequence