Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07605

Experiment: control for light_bubbling experiments

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS07600 and SGL_RS07605 are separated by 52 nucleotidesSGL_RS07605 and SGL_RS07610 are separated by 32 nucleotides SGL_RS07600: SGL_RS07600 - fumarylacetoacetate hydrolase family protein, at 1,228,237 to 1,229,067 _RS07600 SGL_RS07605: SGL_RS07605 - HEAT repeat domain-containing protein, at 1,229,120 to 1,229,938 _RS07605 SGL_RS07610: SGL_RS07610 - cyclophane-forming radical SAM/SPASM peptide maturase GrrM/OscB, at 1,229,971 to 1,231,167 _RS07610 Position (kb) 1229 1230Strain fitness (log2 ratio) -3 -2 -1 0 1at 1228.134 kb on - strandat 1228.271 kb on - strandat 1228.281 kb on + strandat 1228.359 kb on - strand, within SGL_RS07600at 1228.366 kb on - strand, within SGL_RS07600at 1228.649 kb on - strand, within SGL_RS07600at 1228.876 kb on + strand, within SGL_RS07600at 1228.883 kb on + strand, within SGL_RS07600at 1228.925 kb on + strand, within SGL_RS07600at 1229.017 kb on + strandat 1229.017 kb on + strandat 1229.380 kb on + strand, within SGL_RS07605at 1229.397 kb on + strand, within SGL_RS07605at 1229.577 kb on + strand, within SGL_RS07605at 1229.602 kb on - strand, within SGL_RS07605at 1229.705 kb on + strand, within SGL_RS07605at 1229.780 kb on + strand, within SGL_RS07605at 1230.158 kb on + strand, within SGL_RS07610at 1230.160 kb on - strand, within SGL_RS07610at 1230.827 kb on - strand, within SGL_RS07610

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
remove
1,228,134 - -0.2
1,228,271 - -0.0
1,228,281 + -0.1
1,228,359 - SGL_RS07600 0.15 -0.4
1,228,366 - SGL_RS07600 0.16 -0.3
1,228,649 - SGL_RS07600 0.50 +0.1
1,228,876 + SGL_RS07600 0.77 -1.0
1,228,883 + SGL_RS07600 0.78 -0.2
1,228,925 + SGL_RS07600 0.83 +0.2
1,229,017 + -0.1
1,229,017 + -0.1
1,229,380 + SGL_RS07605 0.32 -2.0
1,229,397 + SGL_RS07605 0.34 -2.0
1,229,577 + SGL_RS07605 0.56 -3.2
1,229,602 - SGL_RS07605 0.59 -2.9
1,229,705 + SGL_RS07605 0.71 -2.8
1,229,780 + SGL_RS07605 0.81 -2.5
1,230,158 + SGL_RS07610 0.16 -0.1
1,230,160 - SGL_RS07610 0.16 -0.0
1,230,827 - SGL_RS07610 0.72 -0.0

Or see this region's nucleotide sequence