Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06600

Experiment: control for light_bubbling experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06595 and SGL_RS06600 are separated by 135 nucleotidesSGL_RS06600 and SGL_RS06605 are separated by 215 nucleotidesSGL_RS06605 and SGL_RS06610 overlap by 4 nucleotides SGL_RS06595: SGL_RS06595 - CmpA/NrtA family ABC transporter substrate-binding protein, at 1,009,234 to 1,010,574 _RS06595 SGL_RS06600: SGL_RS06600 - anthranilate phosphoribosyltransferase family protein, at 1,010,710 to 1,011,759 _RS06600 SGL_RS06605: SGL_RS06605 - histidine phosphatase family protein, at 1,011,975 to 1,012,619 _RS06605 SGL_RS06610: SGL_RS06610 - RlpA-like double-psi beta-barrel domain-containing protein, at 1,012,616 to 1,012,888 _RS06610 Position (kb) 1010 1011 1012Strain fitness (log2 ratio) -3 -2 -1 0 1at 1009.724 kb on + strand, within SGL_RS06595at 1009.852 kb on - strand, within SGL_RS06595at 1010.014 kb on - strand, within SGL_RS06595at 1010.060 kb on - strand, within SGL_RS06595at 1010.201 kb on - strand, within SGL_RS06595at 1010.205 kb on + strand, within SGL_RS06595at 1010.241 kb on - strand, within SGL_RS06595at 1010.449 kb on + strandat 1010.583 kb on - strandat 1010.853 kb on - strand, within SGL_RS06600at 1010.895 kb on - strand, within SGL_RS06600at 1010.924 kb on - strand, within SGL_RS06600at 1011.007 kb on + strand, within SGL_RS06600at 1011.031 kb on + strand, within SGL_RS06600at 1011.098 kb on - strand, within SGL_RS06600at 1011.186 kb on + strand, within SGL_RS06600at 1011.214 kb on + strand, within SGL_RS06600at 1011.241 kb on + strand, within SGL_RS06600at 1011.477 kb on - strand, within SGL_RS06600at 1011.477 kb on - strand, within SGL_RS06600at 1011.514 kb on - strand, within SGL_RS06600at 1011.631 kb on - strand, within SGL_RS06600at 1012.034 kb on + strandat 1012.160 kb on + strand, within SGL_RS06605at 1012.213 kb on + strand, within SGL_RS06605at 1012.218 kb on + strand, within SGL_RS06605at 1012.221 kb on - strand, within SGL_RS06605at 1012.337 kb on - strand, within SGL_RS06605at 1012.346 kb on - strand, within SGL_RS06605at 1012.445 kb on - strand, within SGL_RS06605at 1012.479 kb on - strand, within SGL_RS06605at 1012.657 kb on + strand, within SGL_RS06610at 1012.759 kb on + strand, within SGL_RS06610

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Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
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1,009,724 + SGL_RS06595 0.37 -2.2
1,009,852 - SGL_RS06595 0.46 -1.6
1,010,014 - SGL_RS06595 0.58 -3.6
1,010,060 - SGL_RS06595 0.62 -2.1
1,010,201 - SGL_RS06595 0.72 -2.4
1,010,205 + SGL_RS06595 0.72 -1.5
1,010,241 - SGL_RS06595 0.75 -1.4
1,010,449 + -1.1
1,010,583 - -1.9
1,010,853 - SGL_RS06600 0.14 -0.6
1,010,895 - SGL_RS06600 0.18 -1.2
1,010,924 - SGL_RS06600 0.20 -1.1
1,011,007 + SGL_RS06600 0.28 -0.6
1,011,031 + SGL_RS06600 0.31 -0.3
1,011,098 - SGL_RS06600 0.37 -1.0
1,011,186 + SGL_RS06600 0.45 -1.4
1,011,214 + SGL_RS06600 0.48 -0.4
1,011,241 + SGL_RS06600 0.51 -0.9
1,011,477 - SGL_RS06600 0.73 -0.2
1,011,477 - SGL_RS06600 0.73 -1.3
1,011,514 - SGL_RS06600 0.77 -0.8
1,011,631 - SGL_RS06600 0.88 -0.4
1,012,034 + -0.2
1,012,160 + SGL_RS06605 0.29 -0.6
1,012,213 + SGL_RS06605 0.37 -0.2
1,012,218 + SGL_RS06605 0.38 -0.6
1,012,221 - SGL_RS06605 0.38 +0.0
1,012,337 - SGL_RS06605 0.56 +0.3
1,012,346 - SGL_RS06605 0.58 -0.3
1,012,445 - SGL_RS06605 0.73 -0.1
1,012,479 - SGL_RS06605 0.78 +0.3
1,012,657 + SGL_RS06610 0.15 +0.5
1,012,759 + SGL_RS06610 0.52 -0.3

Or see this region's nucleotide sequence