Experiment: control for light_bubbling experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06595 and SGL_RS06600 are separated by 135 nucleotides SGL_RS06600 and SGL_RS06605 are separated by 215 nucleotides SGL_RS06605 and SGL_RS06610 overlap by 4 nucleotides
SGL_RS06595: SGL_RS06595 - CmpA/NrtA family ABC transporter substrate-binding protein, at 1,009,234 to 1,010,574
_RS06595
SGL_RS06600: SGL_RS06600 - anthranilate phosphoribosyltransferase family protein, at 1,010,710 to 1,011,759
_RS06600
SGL_RS06605: SGL_RS06605 - histidine phosphatase family protein, at 1,011,975 to 1,012,619
_RS06605
SGL_RS06610: SGL_RS06610 - RlpA-like double-psi beta-barrel domain-containing protein, at 1,012,616 to 1,012,888
_RS06610
Position (kb)
1010
1011
1012 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1009.724 kb on + strand, within SGL_RS06595 at 1009.852 kb on - strand, within SGL_RS06595 at 1010.014 kb on - strand, within SGL_RS06595 at 1010.060 kb on - strand, within SGL_RS06595 at 1010.201 kb on - strand, within SGL_RS06595 at 1010.205 kb on + strand, within SGL_RS06595 at 1010.241 kb on - strand, within SGL_RS06595 at 1010.449 kb on + strand at 1010.583 kb on - strand at 1010.853 kb on - strand, within SGL_RS06600 at 1010.895 kb on - strand, within SGL_RS06600 at 1010.924 kb on - strand, within SGL_RS06600 at 1011.007 kb on + strand, within SGL_RS06600 at 1011.031 kb on + strand, within SGL_RS06600 at 1011.098 kb on - strand, within SGL_RS06600 at 1011.186 kb on + strand, within SGL_RS06600 at 1011.214 kb on + strand, within SGL_RS06600 at 1011.241 kb on + strand, within SGL_RS06600 at 1011.477 kb on - strand, within SGL_RS06600 at 1011.477 kb on - strand, within SGL_RS06600 at 1011.514 kb on - strand, within SGL_RS06600 at 1011.631 kb on - strand, within SGL_RS06600 at 1012.034 kb on + strand at 1012.160 kb on + strand, within SGL_RS06605 at 1012.213 kb on + strand, within SGL_RS06605 at 1012.218 kb on + strand, within SGL_RS06605 at 1012.221 kb on - strand, within SGL_RS06605 at 1012.337 kb on - strand, within SGL_RS06605 at 1012.346 kb on - strand, within SGL_RS06605 at 1012.445 kb on - strand, within SGL_RS06605 at 1012.479 kb on - strand, within SGL_RS06605 at 1012.657 kb on + strand, within SGL_RS06610 at 1012.759 kb on + strand, within SGL_RS06610
Per-strain Table
Position Strand Gene LocusTag Fraction control for light_bubbling experiments remove 1,009,724 + SGL_RS06595 0.37 -2.2 1,009,852 - SGL_RS06595 0.46 -1.6 1,010,014 - SGL_RS06595 0.58 -3.6 1,010,060 - SGL_RS06595 0.62 -2.1 1,010,201 - SGL_RS06595 0.72 -2.4 1,010,205 + SGL_RS06595 0.72 -1.5 1,010,241 - SGL_RS06595 0.75 -1.4 1,010,449 + -1.1 1,010,583 - -1.9 1,010,853 - SGL_RS06600 0.14 -0.6 1,010,895 - SGL_RS06600 0.18 -1.2 1,010,924 - SGL_RS06600 0.20 -1.1 1,011,007 + SGL_RS06600 0.28 -0.6 1,011,031 + SGL_RS06600 0.31 -0.3 1,011,098 - SGL_RS06600 0.37 -1.0 1,011,186 + SGL_RS06600 0.45 -1.4 1,011,214 + SGL_RS06600 0.48 -0.4 1,011,241 + SGL_RS06600 0.51 -0.9 1,011,477 - SGL_RS06600 0.73 -0.2 1,011,477 - SGL_RS06600 0.73 -1.3 1,011,514 - SGL_RS06600 0.77 -0.8 1,011,631 - SGL_RS06600 0.88 -0.4 1,012,034 + -0.2 1,012,160 + SGL_RS06605 0.29 -0.6 1,012,213 + SGL_RS06605 0.37 -0.2 1,012,218 + SGL_RS06605 0.38 -0.6 1,012,221 - SGL_RS06605 0.38 +0.0 1,012,337 - SGL_RS06605 0.56 +0.3 1,012,346 - SGL_RS06605 0.58 -0.3 1,012,445 - SGL_RS06605 0.73 -0.1 1,012,479 - SGL_RS06605 0.78 +0.3 1,012,657 + SGL_RS06610 0.15 +0.5 1,012,759 + SGL_RS06610 0.52 -0.3
Or see this region's nucleotide sequence